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Li,2011ExperimentsAdaptive Responses to Systemic Infection Escherichia coli APEC O1 (O1:K1:H7); E. coli BW25141 Oxford Gene Technology (Oxford OX5 1PF UK) Lisa K. Nolan
Zhou,2011ExperimentsRegulatory networksEscherichia coli K12 JM109[E_coli_2] Affymetrix E. coli Genome 2.0 Array Transcriptional profile of Escherichia coli K12 strain JM109 harboring pMG1 and pMG1-IrrE under 1M NaCl shock Escherichia coli Ming Chen
Nurmohamed,2011ExperimentsPolynucleotide phosphorylase activity; Metabolites E. coli K-12 MG1655* I- Oxford Gene Technology, Oxford, UK Ben F. Luisi
Rolfe,2011ExperimentsOxygen availability E. coli K-12 MG1655 Ocimum E. coli K12 V2 OciChip Transcript levels under varying conditions (31%, 56%, 85%, & 115%) were compared to basal transcript levels at 0% aerobiosis.Jeffrey Green
Kahramanoglou,2011ExperimentsIndirect effects of H-NS and Fis E. coli K12 MG1655 custom Agilent microarrays Nicholas M. Luscombe
Hosoda,2011ExperimentsCooperative Adaptation; Synthetic Bacterial Mutualism Escherichia coli K-12 DH1 Affymetric GeneChip® E. coli Genome Antisense Genome Array Tetsuya Yomo
Kwon,2011ExperimentsBacterial growth; Succinate adaptation; Tolerance; StressE. coli W3110; DST160 (succinate adapted W3110)Slide; Axon GenePix 4000B ScannerSuccinate adapted cells were created by growing continuous cultures of the wild-type cells. The culture media was changed every 10 turnovers (100 hr) with the succinate concentration gradually increased by 0.11M. The continuous culture reached a steady-state at which point the succinate concentration was 0.592M. The cells were then harvested for DNA microarray analysis. Pil Kim
Dong,2011Experimentsmotility; RpoN and RpoS E. coli K-12 MG1655 Affymetrix E. coli Genome 2.0 Array Precise deletion mutants of rpoS or rpoN of MG1655 were constructed and employed in this study to understand antagonistic regulation of motility and other cellular functions by RpoN and RpoS in E. coli.Herb Schellhorn
Thomassen,2010ExperimentsSmall peptides; UV treatment E. coli K-12 MG1655 Custom made Escherichia coli K12 MG1655 tiling array; GPL7714 The author used a custom tiling array. We are in the process of applying this data to our algorithms.Gard Thomassen
Conrad,2010ExperimentsRegulatory adaptation E. coli K-12 MG1655 Affymetrix GeneChip E. coli 2.0 A transcriptome analysis of small deletions within the rpoC gene encoding the B-subunit of RNA polymerase. MG1655 was subjected to adaptive evolution for 25 days in glycerol M9 minimal medium (GMM) at 30 degrees C to OD600=0.3. Robert Landick