frvB

Microarray Experiment Search Results for frvB (20 total)

ReferenceVariableValuesort ascendingExperimentsContact
Mukhopadhyay,2004norR -5.263000gene : 5    Exp DataGisela Storz
Mukhopadhyay,2004oxyR -4.762000gene : 7    Exp DataGisela Storz
Peter,2004norfloxacin3.730000chemical : 9    Exp DataBrian J Peter
Mukhopadhyay,2004nitrosylated glutathione (GSNO)-3.571000chemical : 2    Exp DataGisela Storz
Mukhopadhyay,2004sodium nitrite (NaNO2)-3.571000chemical : 4    Exp DataGisela Storz
Peter,200437C vs 42C-3.333000growth : 31    Exp DataBrian J Peter
Gadgil,200537C vs 33C2.908000growth : 3    Exp DataWei-Shou Hu
Li,2003rnpA 2.900000gene : 4    Exp DataSidney Altman
Peter,2004norfloxacin2.840000chemical : 8    Exp DataBrian J Peter
Peter,2004norfloxacin 2.721000chemical : 6    Exp DataBrian J Peter
Peter,2004norfloxacin2.659000chemical : 10    Exp DataBrian J Peter
Zimmer,2000glnG -2.564000gene : 5    Exp DataSydney Kustu
Mukhopadhyay,2004fur -2.326000gene : 6    Exp DataGisela Storz
Stoebel,2009rpoS+4 ; wt ; evolved ; strain 2.301000gene : 5    Exp DataCharles J. Dorman
Peter,200437C vs 42C-2.173000growth : 30    Exp DataBrian J Peter
Stoebel,2009rpoS+2 ; WT ; evolved ; strain 2.154000gene : 3    Exp DataCharles J. Dorman
Stoebel,2009rpoS+3 ; WT ; evolved ; strain 2.152000gene : 4    Exp DataCharles J. Dorman
Gadgil,200537C vs 28C2.144000growth : 12    Exp DataWei-Shou Hu
Li,2003rnpA 2.000000gene : 2    Exp DataSidney Altman
Peter,2004gyrB -2.000000gene : 33    Exp DataBrian J Peter

Mukhopadhyay,2004 All Experiments Top

gene experimental details:
Exp IDExp DataGene NameAlleleComments
5Show DatanorR norR::kan(deletion)Cultures were treated with 1mM GSNO. P1 transductions after deletion construction.
7Show DataoxyR oxyR::kan(deletion)Cultures were treated with 1mM GSNO. P1 transductions after deletion construction.

Peter,2004 All Experiments Top

chemical experimental details:
Exp IDExp DataNameConcentrationTime addedDurationComments
9Show Datanorfloxacin50ug/ml20 mingyrAr/parCCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic.

Mukhopadhyay,2004 All Experiments Top

chemical experimental details:
Exp IDExp DataNameConcentrationTime addedDurationComments
2Show Datanitrosylated glutathione (GSNO)1mMexponential phase5 minLB rich
4Show Datasodium nitrite (NaNO2)1mMexponential phase5 minLB rich

Peter,2004 All Experiments Top

growth experimental details:
Exp IDExp DataNameVariableShift timeDurationComments
31Show Data37C vs 42C42Csteady20 mingyrB+, served as a control for the gyrB ts experiments to ensure changes due to gyrB mutation, not temperature shift.

Gadgil,2005 All Experiments Top

growth experimental details:
Exp IDExp DataNameVariableShift timeDurationComments
3Show Data37C vs 33C33COD600=0.620 minCells were shifted from 37C to 33C, RNA was extracted 20 min post shift. Cultures were grown in minimal media.

Li,2003 All Experiments Top

gene experimental details:
Exp IDExp DataGene NameAlleleComments
4Show DatarnpA A49 to G(temperature sensitive)RNA extracted at 15 min post 42C shift was compared to RNA extracted at 45 min post 42C shift.

Peter,2004 All Experiments Top

chemical experimental details:
Exp IDExp DataNameConcentrationTime addedDurationComments
8Show Datanorfloxacin50ug/ml10 mingyrAr/parCCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic.
6Show Datanorfloxacin 50ug/ml2 mingyrAr/parCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic.
10Show Datanorfloxacin50ug/ml30mingyrAr/parCCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic.

Zimmer,2000 All Experiments Top

gene experimental details:
Exp IDExp DataGene NameAlleleComments
5Show DataglnG glnG10::Tn5(null)The glnG null mutant was compared to the glnL2302 (overexpression) mutant, both of these mutations effect the nitrogen regulatory protein C regulon so effectively comparing a null to an overexpression strain. Glutamine was used as a N source and primer set 1 was used in this experiment.

Mukhopadhyay,2004 All Experiments Top

gene experimental details:
Exp IDExp DataGene NameAlleleComments
6Show Datafur fur::kan(deletion)Cultures were treated with 1mM GSNO. P1 transductions after deletion construction.

Stoebel,2009 All Experiments Top

gene experimental details:
Exp IDExp DataGene NameAlleleComments
5Show DatarpoS+4 ; wt ; evolved ; strain rpoS+4The rpoS+4 strain contains unknown mutations responsible for the expression differences as compared to the rpoS+ parent strain. Cells for RNA preparation were grown in MOPS minimal medium (0.2% glucose) + 0.3M NaCl.

Peter,2004 All Experiments Top

growth experimental details:
Exp IDExp DataNameVariableShift timeDurationComments
30Show Data37C vs 42C42Csteady10 mingyrB+, served as a control for the gyrB ts experiments to ensure changes due to gyrB mutation, not temperature shift.

Stoebel,2009 All Experiments Top

gene experimental details:
Exp IDExp DataGene NameAlleleComments
3Show DatarpoS+2 ; WT ; evolved ; strain rpoS+2The rpoS+2 strain contains unknown mutations responsible for the expression differences as compared to the rpoS+ parent strain. Cells for RNA preparation were grown in MOPS minimal medium (0.2% glucose) + 0.3M NaCl.
4Show DatarpoS+3 ; WT ; evolved ; strain rpoS+3The rpoS+3 strain contains unknown mutations responsible for the expression differences as compared to the rpoS+ parent strain. Cells for RNA preparation were grown in MOPS minimal medium (0.2% glucose) + 0.3M NaCl.

Gadgil,2005 All Experiments Top

growth experimental details:
Exp IDExp DataNameVariableShift timeDurationComments
12Show Data37C vs 28C28COD600=0.660 minCells were shifted from 37C to 28C, RNA was extracted 60 min post shift. Cultures were grown in minimal media.

Li,2003 All Experiments Top

gene experimental details:
Exp IDExp DataGene NameAlleleComments
2Show DatarnpA A49 to G(temperature sensitive)RNA was extracted 15 min post shift from 30C to 42C.

Peter,2004 All Experiments Top

gene experimental details:
Exp IDExp DataGene NameAlleleComments
33Show DatagyrB gyrB ts(temperature sensitive)42C for 5 minutes compared to gyrB ts at 37C