BLAST Search Results

Blast performed on March-19-2010
BLASTN 2.2.13 [Nov-27-2005]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           4,613,659 sequences; 18,017,093,371 total letters



Query= EG31149 sgrS 
         (227 letters)

Distribution of 35 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY653237.1|  Escherichia coli K12 SgrS (sgrS) gene, compl...   450   e-124 
dbj|AP009048.1|  Escherichia coli str. K12 substr. W3110 DNA...   450   e-124 
gb|U00096.2|  Escherichia coli str. K-12 substr. MG1655, com...   450   e-124 
gb|CP000266.1|  Shigella flexneri 5 str. 8401, complete genome    442   e-121 
gb|AE005674.1|  Shigella flexneri 2a str. 301, complete genome    442   e-121 
gb|AE014073.1|  Shigella flexneri 2a str. 2457T, complete ge...   442   e-121 
gb|CP000036.1|  Shigella boydii Sb227, complete genome            442   e-121 
gb|CP000038.1|  Shigella sonnei Ss046, complete genome            442   e-121 
gb|CP000247.1|  Escherichia coli 536, complete genome             244   1e-61 
gb|CP000034.1|  Shigella dysenteriae Sd197, complete genome       244   1e-61 
gb|CP000468.1|  Escherichia coli APEC O1, complete genome         236   3e-59 
gb|CP000243.1|  Escherichia coli UTI89, complete genome           236   3e-59 
gb|AE014075.1|  Escherichia coli CFT073, complete genome          236   3e-59 
dbj|BA000007.2|  Escherichia coli O157:H7 str. Sakai DNA, co...   236   3e-59 
gb|AE005174.2|  Escherichia coli O157:H7 EDL933, complete ge...   236   3e-59 
gb|DQ077522.1|  Salmonella enterica subsp. enterica serovar ...    58   1e-05 
gb|DQ077521.1|  Salmonella enterica subsp. enterica serovar ...    58   1e-05 
gb|CP000026.1|  Salmonella enterica subsp. enterica serovar ...    58   1e-05 
gb|AE017220.1|  Salmonella enterica subsp. enterica serovar ...    58   1e-05 
gb|AE014613.1|  Salmonella enterica subsp. enterica serovar ...    56   5e-05 
emb|AL627265.1|  Salmonella enterica serovar Typhi (Salmonel...    56   5e-05 
emb|X02528.1|  Salmonella typhimurium leuD gene for IPM isom...    54   2e-04 

>gb|AY653237.1| Escherichia coli K12 SgrS (sgrS) gene, complete sequence
          Length = 227

 Score =  450 bits (227), Expect = e-124
 Identities = 227/227 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60

                                                                       
Query: 61  aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120

                                                                       
Query: 121 atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 180

                                                          
Query: 181 ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 227



>dbj|AP009048.1| Escherichia coli str. K12 substr. W3110 DNA, complete genome
          Length = 4646332

 Score =  450 bits (227), Expect = e-124
 Identities = 227/227 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77367 gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 77426

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77427 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 77486

                                                                         
Query: 121   atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77487 atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 77546

                                                            
Query: 181   ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 227
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77547 ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 77593



>gb|U00096.2| Escherichia coli str. K-12 substr. MG1655, complete genome
          Length = 4639675

 Score =  450 bits (227), Expect = e-124
 Identities = 227/227 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77367 gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 77426

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77427 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 77486

                                                                         
Query: 121   atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77487 atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 77546

                                                            
Query: 181   ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 227
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77547 ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 77593



>gb|CP000266.1| Shigella flexneri 5 str. 8401, complete genome
          Length = 4574284

 Score =  442 bits (223), Expect = e-121
 Identities = 226/227 (99%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74877 gatgaagcaaggaggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 74936

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74937 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 74996

                                                                         
Query: 121   atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74997 atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 75056

                                                            
Query: 181   ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 227
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75057 ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 75103



>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score =  442 bits (223), Expect = e-121
 Identities = 226/227 (99%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75209 gatgaagcaaggaggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 75268

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75269 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 75328

                                                                         
Query: 121   atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75329 atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 75388

                                                            
Query: 181   ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 227
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75389 ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 75435



>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score =  442 bits (223), Expect = e-121
 Identities = 226/227 (99%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74695 gatgaagcaaggaggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 74754

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74755 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 74814

                                                                         
Query: 121   atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74815 atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 74874

                                                            
Query: 181   ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 227
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74875 ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 74921



>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score =  442 bits (223), Expect = e-121
 Identities = 226/227 (99%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64951 gatgaagcaaggaggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 65010

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65011 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 65070

                                                                         
Query: 121   atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65071 atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 65130

                                                            
Query: 181   ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 227
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65131 ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 65177



>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score =  442 bits (223), Expect = e-121
 Identities = 226/227 (99%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85151 gatgaagcaaggaggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 85210

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85211 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 85270

                                                                         
Query: 121   atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85271 atgcagtgggatgaccgcaattctgaaagttgacttgcctgcatcatgtgtgactgagta 85330

                                                            
Query: 181   ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 227
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85331 ttggtgtaaaatcacccgccagcagattatacctgctggtttttttt 85377



>gb|CP000247.1| Escherichia coli 536, complete genome
          Length = 4938920

 Score =  244 bits (123), Expect = 1e-61
 Identities = 129/131 (98%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79909 gatgaagcaaggaggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 79968

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 79969 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaagaactg 80028

                        
Query: 121   atgcagtggga 131
             |||||||||||
Sbjct: 80029 atgcagtggga 80039




 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 162   catcatgtgtgactgagtattggtgt 187
             ||||||||||||||||||||||||||
Sbjct: 80070 catcatgtgtgactgagtattggtgt 80095



>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score =  244 bits (123), Expect = 1e-61
 Identities = 129/131 (98%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99173 gatgaagcaaggaggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 99232

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 99233 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaagaactg 99292

                        
Query: 121   atgcagtggga 131
             |||||||||||
Sbjct: 99293 atgcagtggga 99303




 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 162   catcatgtgtgactgagtattggtgt 187
             ||||||||||||||||||||||||||
Sbjct: 99334 catcatgtgtgactgagtattggtgt 99359



>gb|CP000468.1| Escherichia coli APEC O1, complete genome
          Length = 5082025

 Score =  236 bits (119), Expect = 3e-59
 Identities = 128/131 (97%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81014 gatgaagcaaggaggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 81073

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 81074 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaagagctg 81133

                        
Query: 121   atgcagtggga 131
             |||||||||||
Sbjct: 81134 atgcagtggga 81144




 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 162   catcatgtgtgactgagtattggtgt 187
             ||||||||||||||||||||||||||
Sbjct: 81175 catcatgtgtgactgagtattggtgt 81200



>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score =  236 bits (119), Expect = 3e-59
 Identities = 128/131 (97%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81033 gatgaagcaaggaggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 81092

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 81093 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaagagctg 81152

                        
Query: 121   atgcagtggga 131
             |||||||||||
Sbjct: 81153 atgcagtggga 81163




 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 162   catcatgtgtgactgagtattggtgt 187
             ||||||||||||||||||||||||||
Sbjct: 81194 catcatgtgtgactgagtattggtgt 81219



>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score =  236 bits (119), Expect = 3e-59
 Identities = 128/131 (97%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81708 gatgaagcaaggaggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 81767

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 81768 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaagagctg 81827

                        
Query: 121   atgcagtggga 131
             |||||||||||
Sbjct: 81828 atgcagtggga 81838




 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 162   catcatgtgtgactgagtattggtgt 187
             ||||||||||||||||||||||||||
Sbjct: 81869 catcatgtgtgactgagtattggtgt 81894



>dbj|BA000007.2| Escherichia coli O157:H7 str. Sakai DNA, complete genome
          Length = 5498450

 Score =  236 bits (119), Expect = 3e-59
 Identities = 128/131 (97%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 83195 gatgaagcaaggaggtgccccattcgtcagttttatcagcactattttaccgcgacagcg 83254

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 83255 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaagaactg 83314

                        
Query: 121   atgcagtggga 131
             |||||||||||
Sbjct: 83315 atgcagtggga 83325




 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 162   catcatgtgtgactgagtattggtgt 187
             ||||||||||||||||||||||||||
Sbjct: 83356 catcatgtgtgactgagtattggtgt 83381



>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score =  236 bits (119), Expect = 3e-59
 Identities = 128/131 (97%)
 Strand = Plus / Plus

                                                                         
Query: 1     gatgaagcaagggggtgccccatgcgtcagttttatcagcactattttaccgcgacagcg 60
             |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 83196 gatgaagcaaggaggtgccccattcgtcagttttatcagcactattttaccgcgacagcg 83255

                                                                         
Query: 61    aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaaggactg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 83256 aagttgtgctggttgcgttggttaagcgtcccacaacgattaaccatgcttgaagaactg 83315

                        
Query: 121   atgcagtggga 131
             |||||||||||
Sbjct: 83316 atgcagtggga 83326




 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 162   catcatgtgtgactgagtattggtgt 187
             ||||||||||||||||||||||||||
Sbjct: 83357 catcatgtgtgactgagtattggtgt 83382



>gb|DQ077522.1| Salmonella enterica subsp. enterica serovar Typhimurium isolate
           M1863 transport system paral putative
           periplasmic-binding protein (yabN) gene, partial cds;
           mutated intergenic region TM110, complete sequence; and
           3-isopropylmalate isomerase (leuD) gene, partial cds
          Length = 588

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 187 taaaatcacccgccagcagattatacctgctggtttttttt 227
           ||||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 293 taaaatcacccgccagcagataatatctgctggcttttttt 333




 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 162 catcatgtgtgactgagtattggtgta 188
           |||||||||||||||||||||||||||
Sbjct: 256 catcatgtgtgactgagtattggtgta 282



>gb|DQ077521.1| Salmonella enterica subsp. enterica serovar Typhimurium isolate
           M1846 transport system paral putative
           periplasmic-binding protein (yabN) gene, partial cds;
           mutated intergenic region TM110, complete sequence; and
           3-isopropylmalate isomerase (leuD) gene, partial cds
          Length = 591

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 187 taaaatcacccgccagcagattatacctgctggtttttttt 227
           ||||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 296 taaaatcacccgccagcagataatatctgctggcttttttt 336




 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 162 catcatgtgtgactgagtattggtgta 188
           |||||||||||||||||||||||||||
Sbjct: 259 catcatgtgtgactgagtattggtgta 285



>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150,
              complete genome
          Length = 4585229

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                       
Query: 187    taaaatcacccgccagcagattatacctgctggtttttttt 227
              ||||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 130276 taaaatcacccgccagcagataatatctgctggcttttttt 130316




 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 162    catcatgtgtgactgagtattggtgta 188
              |||||||||||||||||||||||||||
Sbjct: 130239 catcatgtgtgactgagtattggtgta 130265



>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
              complete genome
          Length = 4755700

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                       
Query: 187    taaaatcacccgccagcagattatacctgctggtttttttt 227
              ||||||||||||||||||||| ||| ||||||| |||||||
Sbjct: 122785 taaaatcacccgccagcagataatatctgctggcttttttt 122825




 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 162    catcatgtgtgactgagtattggtgta 188
              |||||||||||||||||||||||||||
Sbjct: 122748 catcatgtgtgactgagtattggtgta 122774



>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 187    taaaatcacccgccagcagattatacctgctggttttttt 226
              ||||||||||||||||||||| ||| ||||||| ||||||
Sbjct: 130178 taaaatcacccgccagcagataatatctgctggctttttt 130217




 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 162    catcatgtgtgactgagtattggtgta 188
              |||||||||||||||||||||||||||
Sbjct: 130141 catcatgtgtgactgagtattggtgta 130167



>emb|AL627265.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 1/20
          Length = 251050

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 187    taaaatcacccgccagcagattatacctgctggttttttt 226
              ||||||||||||||||||||| ||| ||||||| ||||||
Sbjct: 130187 taaaatcacccgccagcagataatatctgctggctttttt 130226




 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 162    catcatgtgtgactgagtattggtgta 188
              |||||||||||||||||||||||||||
Sbjct: 130150 catcatgtgtgactgagtattggtgta 130176



>emb|X02528.1| Salmonella typhimurium leuD gene for IPM isomerase
          Length = 1074

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 162 catcatgtgtgactgagtattggtgta 188
           |||||||||||||||||||||||||||
Sbjct: 941 catcatgtgtgactgagtattggtgta 915




  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Mar 11, 2010  5:43 PM
  Number of letters in database: 3,565,734,935
  Number of sequences in database:  913,484
  
  Database: /data/DB/nt.01
    Posted date:  Mar 11, 2010  4:14 PM
  Number of letters in database: 3,760,771,332
  Number of sequences in database:  709,306
  
  Database: /data/DB/nt.02
    Posted date:  Mar 11, 2010  4:14 PM
  Number of letters in database: 3,449,861,827
  Number of sequences in database:  676,052
  
  Database: /data/DB/nt.03
    Posted date:  Mar 11, 2010  4:15 PM
  Number of letters in database: 3,621,733,482
  Number of sequences in database:  898,670
  
  Database: /data/DB/nt.04
    Posted date:  Mar 11, 2010  4:15 PM
  Number of letters in database: 3,618,991,795
  Number of sequences in database:  1,416,147
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,576,703
Number of Sequences: 4613659
Number of extensions: 1576703
Number of successful extensions: 96457
Number of sequences better than 1.0e-01: 22
Number of HSP's better than  0.1 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95481
Number of HSP's gapped (non-prelim): 976
length of query: 227
length of database: 18,017,093,371
effective HSP length: 21
effective length of query: 206
effective length of database: 17,920,206,532
effective search space: 3691562545592
effective search space used: 3691562545592
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)