Blast performed on February-13-2007
BLASTP 2.2.13 [Nov-27-2005]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: nr_env 
           5,549,519 sequences; 1,762,256,069 total letters

Query= EG12609 rluA 
         (219 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00923868.1|  COG0564: Pseudouridylate synthases, 23S ...   451   e-125 
ref|NP_414600.1|  pseudouridine synthase for 23S rRNA (posit...   451   e-125 
ref|NP_752021.1|  Ribosomal large subunit pseudouridine synt...   451   e-125 
ref|ZP_00715671.1|  COG0564: Pseudouridylate synthases, 23S ...   450   e-125 
ref|YP_539104.1|  ribosomal large subunit pseudouridine synt...   449   e-125 
ref|ZP_00695824.1|  COG0564: Pseudouridylate synthases, 23S ...   449   e-125 
ref|NP_285754.1|  hypothetical protein Z0066 [Escherichia co...   447   e-124 
ref|NP_459100.1|  23S rRNA pseudouridylate 746 synthase [Sal...   434   e-120 
ref|NP_454707.1|  ribosomal large subunit pseudouridine synt...   433   e-120 
ref|YP_215077.1|  23S rRNA pseudouridylate 746 synthase [Sal...   432   e-120 
ref|YP_149441.1|  ribosomal large subunit pseudouridine synt...   429   e-119 
pdb|2I82|A  Chain A, Crystal Structure Of Pseudouridine Synt...   429   e-119 
ref|ZP_01591262.1|  pseudouridine synthase [Enterobacter sp....   415   e-114 
ref|NP_706012.1|  hypothetical protein SF0053 [Shigella flex...   388   e-106 
ref|ZP_00823779.1|  COG0564: Pseudouridylate synthases, 23S ...   355   9e-97 
ref|ZP_00825743.1|  COG0564: Pseudouridylate synthases, 23S ...   353   5e-96 
ref|YP_051942.1|  ribosomal large subunit pseudouridine synt...   352   8e-96 
ref|ZP_00831665.1|  COG0564: Pseudouridylate synthases, 23S ...   350   2e-95 
ref|ZP_00832125.1|  COG0564: Pseudouridylate synthases, 23S ...   347   3e-94 
ref|NP_927960.1|  ribosomal large subunit pseudouridine synt...   337   2e-91 
ref|YP_454109.1|  ribosomal large subunit pseudouridine synt...   333   3e-90 
ref|NP_404140.1|  ribosomal large subunit pseudouridine synt...   330   2e-89 
ref|ZP_01536924.1|  pseudouridine synthase [Serratia proteam...   325   1e-87 
ref|YP_001004987.1|  ribosomal large subunit pseudouridine s...   309   8e-83 
ref|YP_087423.1|  RluA protein [Mannheimia succiniciproducen...   289   8e-77 
ref|YP_248428.1|  ribosomal large subunit pseudouridine synt...   285   2e-75 
ref|ZP_00733117.1|  Pseudouridylate synthase [Actinobacillus...   285   2e-75 
ref|ZP_00133946.2|  COG0564: Pseudouridylate synthases, 23S ...   284   2e-75 
ref|ZP_00154655.1|  COG0564: Pseudouridylate synthases, 23S ...   284   2e-75 
gb|EAJ15019.1|  unknown [environmental sequence]                  283   6e-75 
ref|ZP_01602309.1|  Pseudouridylate synthase [Shewanella pea...   283   6e-75 
ref|NP_438775.1|  hypothetical protein HI0617 [Haemophilus i...   283   6e-75 
ref|ZP_00156579.1|  COG0564: Pseudouridylate synthases, 23S ...   281   1e-74 
ref|NP_874128.1|  pseudouridylate synthase [Haemophilus ducr...   281   2e-74 
ref|YP_868443.1|  pseudouridine synthase [Shewanella sp. ANA...   280   3e-74 
ref|NP_246775.1|  RsuA [Pasteurella multocida subsp. multoci...   280   5e-74 
ref|YP_736883.1|  Pseudouridylate synthase [Shewanella sp. M...   278   1e-73 
ref|ZP_00133666.1|  COG0564: Pseudouridylate synthases, 23S ...   277   3e-73 
gb|EAI68227.1|  unknown [environmental sequence]                  276   4e-73 
ref|YP_735267.1|  Pseudouridylate synthase [Shewanella sp. M...   276   4e-73 
ref|YP_719725.1|  ribosomal large subunit pseudouridine synt...   276   7e-73 
ref|ZP_01433420.1|  Pseudouridylate synthase [Shewanella bal...   274   2e-72 
ref|ZP_00837711.1|  Pseudouridylate synthase [Shewanella sp....   274   3e-72 
ref|ZP_01539617.1|  pseudouridine synthase [Shewanella woody...   273   4e-72 
ref|ZP_00580844.1|  Pseudouridylate synthase [Shewanella bal...   273   6e-72 
ref|ZP_01219946.1|  putative ribosomal large subunit pseudou...   271   1e-71 
ref|YP_435785.1|  Pseudouridylate synthases, 23S RNA-specifi...   271   1e-71 
ref|YP_964707.1|  Pseudouridylate synthase [Shewanella sp. W...   271   2e-71 
ref|ZP_00812320.1|  Pseudouridylate synthase [Shewanella put...   271   2e-71 
ref|YP_128642.1|  putative ribosomal large subunit pseudouri...   270   4e-71 
ref|ZP_01236596.1|  putative ribosomal large subunit pseudou...   269   9e-71 
ref|YP_749214.1|  Pseudouridylate synthase [Shewanella frigi...   267   3e-70 
ref|YP_564049.1|  Pseudouridylate synthase [Shewanella denit...   265   1e-69 
ref|YP_926484.1|  pseudouridylate synthase [Shewanella amazo...   263   6e-69 
gb|EAK09588.1|  unknown [environmental sequence]                  262   1e-68 
ref|YP_855405.1|  ribosomal large subunit pseudouridine synt...   262   1e-68 
ref|ZP_01161970.1|  putative ribosomal large subunit pseudou...   262   1e-68 
ref|ZP_01110041.1|  pseudouridylate synthase for 23S rRNA (p...   260   4e-68 
ref|YP_663385.1|  Pseudouridylate synthase [Pseudoalteromona...   258   1e-67 
ref|ZP_00992782.1|  ribosomal large subunit pseudouridine sy...   258   2e-67 
ref|YP_341117.1|  pseudouridylate synthase for 23S rRNA (pos...   258   2e-67 
ref|NP_799058.1|  ribosomal large subunit pseudouridine synt...   256   4e-67 
gb|EAJ63553.1|  unknown [environmental sequence]                  256   8e-67 
ref|YP_203654.1|  ribosomal large subunit pseudouridine synt...   253   6e-66 
ref|ZP_01066134.1|  ribosomal large subunit pseudouridine sy...   253   6e-66 
ref|ZP_01475518.1|  hypothetical protein VEx2w_02001849 [Vib...   253   6e-66 
ref|NP_935717.1|  pseudouridylate synthase [Vibrio vulnificu...   251   2e-65 
ref|ZP_01260669.1|  ribosomal large subunit pseudouridine sy...   251   2e-65 
ref|NP_760373.1|  Pseudouridylate synthase, 23S RNA-specific...   249   7e-65 
ref|ZP_01545788.1|  pseudouridine synthase [Stappia aggregat...   249   9e-65 
ref|YP_168588.1|  ribosomal large subunit pseudouridine synt...   248   2e-64 
ref|ZP_01613275.1|  pseudouridylate synthase [Alteromonadale...   246   5e-64 
ref|ZP_01042843.1|  Predicted pseudouridylate synthase, Rlu ...   244   2e-63 
ref|YP_156605.1|  Predicted pseudouridylate synthase, Rlu fa...   244   3e-63 
ref|YP_271168.1|  ribosomal large subunit pseudouridine synt...   243   5e-63 
ref|ZP_01133770.1|  pseudouridylate synthase for 23S rRNA [P...   242   9e-63 
ref|ZP_01657963.1|  Pseudouridylate synthase [Parvibaculum l...   239   6e-62 
ref|ZP_00959993.1|  ribosomal large subunit pseudouridine sy...   239   1e-61 
ref|ZP_00948766.1|  ribosomal large subunit pseudouridine sy...   237   4e-61 
gb|EAY33463.1|  ribosomal large subunit pseudouridine syntha...   234   2e-60 
ref|NP_232134.1|  ribosomal large subunit pseudouridine synt...   233   4e-60 
ref|ZP_00757199.1|  COG0564: Pseudouridylate synthases, 23S ...   231   2e-59 
ref|ZP_01443456.1|  ribosomal large subunit pseudouridine sy...   231   3e-59 
ref|ZP_01678555.1|  ribosomal large subunit pseudouridine sy...   230   3e-59 
ref|YP_759136.1|  RNA pseudouridine synthase family protein ...   229   6e-59 
ref|YP_680442.1|  ribosomal large subunit pseudouridine synt...   228   2e-58 
ref|ZP_01057980.1|  ribosomal large subunit pseudouridine sy...   227   3e-58 
ref|ZP_01583552.1|  Pseudouridylate synthase [Dinoroseobacte...   227   4e-58 
ref|ZP_01448980.1|  pseudouridylate synthase for 23S rRNA (p...   227   4e-58 
ref|ZP_01035131.1|  ribosomal large subunit pseudouridine sy...   226   5e-58 
ref|ZP_00630502.1|  Pseudouridylate synthase [Paracoccus den...   224   2e-57 
gb|EAK48838.1|  unknown [environmental sequence]                  223   4e-57 
ref|YP_511966.1|  pseudouridine synthase [Jannaschia sp. CCS...   223   4e-57 
ref|ZP_01002411.1|  ribosomal large subunit pseudouridine sy...   223   4e-57 
ref|ZP_01017282.1|  ribosomal large subunit pseudouridine sy...   223   5e-57 
ref|YP_612067.1|  pseudouridine synthase [Silicibacter sp. T...   223   5e-57 
ref|YP_351547.1|  Pseudouridine synthase, Rlu [Rhodobacter s...   223   7e-57 
ref|YP_756024.1|  pseudouridine synthase [Maricaulis maris M...   222   9e-57 
gb|EAG78290.1|  unknown [environmental sequence]                  222   1e-56 
ref|ZP_01217040.1|  putative ribosomal large subunit pseudou...   222   1e-56 
ref|NP_356602.1|  hypothetical protein AGR_L_1625 [Agrobacte...   222   1e-56 
ref|ZP_01158209.1|  ribosomal large subunit pseudouridine sy...   222   1e-56 
ref|ZP_01011805.1|  ribosomal large subunit pseudouridine sy...   222   1e-56 
ref|ZP_01168005.1|  Pseudouridine synthase [Oceanospirillum ...   221   2e-56 
ref|ZP_00998944.1|  ribosomal large subunit pseudouridine sy...   220   5e-56 
ref|ZP_00915129.1|  ribosomal large subunit pseudouridine sy...   220   5e-56 
ref|YP_933366.1|  pseudouridine synthase A [Azoarcus sp. BH7...   218   2e-55 
ref|NP_903421.1|  pseudouridine synthase A [Chromobacterium ...   216   7e-55 
ref|ZP_01447226.1|  ribosomal large subunit pseudouridine sy...   215   1e-54 
gb|ABK79684.1|  ribosomal large subunit pseudouridine syntha...   214   2e-54 
gb|EAI23274.1|  unknown [environmental sequence]                  214   3e-54 
ref|YP_273849.1|  ribosomal large subunit pseudouridine synt...   214   3e-54 
gb|EAJ42975.1|  unknown [environmental sequence]                  213   4e-54 
ref|YP_942020.1|  pseudouridine synthase [Psychromonas ingra...   213   4e-54 
ref|YP_607124.1|  ribosomal large subunit pseudouridine synt...   212   1e-53 
ref|YP_234696.1|  Pseudouridine synthase [Pseudomonas syring...   211   2e-53 
ref|ZP_00901716.1|  pseudouridine synthase RluA [Pseudomonas...   211   2e-53 
gb|EAK24273.1|  unknown [environmental sequence]                  211   3e-53 
ref|ZP_01641956.1|  pseudouridine synthase [Pseudomonas puti...   211   3e-53 
ref|ZP_01527123.1|  pseudouridine synthase [Pseudomonas mend...   211   3e-53 
ref|YP_261474.1|  ribosomal large subunit pseudouridine synt...   209   6e-53 
gb|EAJ34219.1|  unknown [environmental sequence]                  208   1e-52 
gb|EAG74589.1|  unknown [environmental sequence]                  208   1e-52 
ref|YP_524008.1|  pseudouridine synthase [Rhodoferax ferrire...   208   2e-52 
gb|EAJ90019.1|  unknown [environmental sequence]                  207   2e-52 
ref|YP_692914.1|  ribosomal large subunit pseudouridine synt...   207   2e-52 
ref|YP_001021386.1|  pseudouridine synthase A [Methylibium p...   207   4e-52 
ref|ZP_01618111.1|  23S rRNA pseudouridylate 746 synthase [m...   207   4e-52 
ref|YP_347424.1|  Pseudouridine synthase [Pseudomonas fluore...   207   4e-52 
gb|EAD62706.1|  unknown [environmental sequence]                  206   7e-52 
ref|YP_789909.1|  ribosomal large subunit pseudouridine synt...   206   7e-52 
ref|ZP_01542315.1|  pseudouridine synthase [Shewanella woody...   206   9e-52 
ref|NP_251936.1|  pseudouridine synthase RluA [Pseudomonas a...   206   9e-52 
ref|YP_314416.1|  ribosomal large subunit pseudouridine synt...   205   1e-51 
ref|YP_287350.1|  Pseudouridine synthase [Dechloromonas arom...   202   8e-51 
ref|ZP_00416765.1|  Pseudouridylate synthase [Azotobacter vi...   202   1e-50 
ref|ZP_01294284.1|  hypothetical protein PaerP_01003857 [Pse...   202   1e-50 
gb|EAB72709.1|  unknown [environmental sequence]                  199   1e-49 
ref|ZP_01627139.1|  pseudouridylate synthase for 23S rRNA an...   198   1e-49 
gb|EAD32494.1|  unknown [environmental sequence]                  198   2e-49 
ref|ZP_01307601.1|  23S rRNA pseudouridylate 746 synthase [O...   198   2e-49 
ref|ZP_01435489.1|  Pseudouridylate synthase [Shewanella bal...   197   2e-49 
ref|YP_661206.1|  Pseudouridylate synthase [Pseudoalteromona...   197   3e-49 
ref|YP_928072.1|  pseudouridylate synthase [Shewanella amazo...   197   3e-49 
gb|EAG28803.1|  unknown [environmental sequence]                  197   4e-49 
ref|ZP_00838754.1|  Pseudouridine synthase [Shewanella sp. P...   196   5e-49 
ref|YP_733512.1|  Pseudouridylate synthase [Shewanella sp. M...   195   1e-48 
ref|ZP_01604673.1|  Pseudouridylate synthase [Shewanella pea...   195   2e-48 
ref|YP_390925.1|  Pseudouridine synthase [Thiomicrospira cru...   194   3e-48 
ref|YP_045447.1|  dual specificity pseudouridine synthase fo...   194   3e-48 
ref|YP_981512.1|  pseudouridine synthase [Polaromonas naphth...   194   3e-48 
ref|YP_550264.1|  pseudouridine synthase [Polaromonas sp. JS...   194   4e-48 
ref|YP_751385.1|  pseudouridine synthase [Shewanella frigidi...   194   4e-48 
ref|ZP_00583094.1|  Pseudouridylate synthase [Shewanella bal...   193   5e-48 
gb|EAJ56973.1|  unknown [environmental sequence]                  192   8e-48 
ref|YP_737498.1|  Pseudouridylate synthase [Shewanella sp. M...   192   8e-48 
ref|YP_869070.1|  pseudouridine synthase [Shewanella sp. ANA...   192   8e-48 
gb|EAK67811.1|  unknown [environmental sequence]                  192   1e-47 
ref|YP_527123.1|  Isocitrate dehydrogenase NADP-dependent, m...   191   2e-47 
ref|ZP_01090421.1|  pseudouridine synthase RluA [Blastopirel...   191   2e-47 
ref|YP_563527.1|  Pseudouridylate synthase [Shewanella denit...   189   7e-47 
ref|YP_962912.1|  Pseudouridylate synthase [Shewanella sp. W...   188   1e-46 
ref|ZP_01617723.1|  putative 23S rRNA pseudouridylate 746 sy...   187   3e-46 
ref|ZP_01132823.1|  Pseudouridylate synthase, 23S RNA-specif...   187   4e-46 
ref|ZP_00815473.1|  Pseudouridylate synthase [Shewanella put...   187   4e-46 
ref|YP_751678.1|  pseudouridine synthase [Shewanella frigidi...   187   4e-46 
ref|ZP_01646010.1|  pseudouridine synthase [Stenotrophomonas...   185   2e-45 
gb|EAJ34220.1|  unknown [environmental sequence]                  182   8e-45 
ref|NP_232505.1|  ribosomal large subunit pseudouridine synt...   181   2e-44 
ref|ZP_01483682.1|  hypothetical protein VchoR_02000385 [Vib...   181   2e-44 
ref|ZP_01486325.1|  hypothetical protein VchoV5_02001023 [Vi...   181   2e-44 
ref|ZP_00754398.1|  COG0564: Pseudouridylate synthases, 23S ...   181   2e-44 
ref|ZP_01103654.1|  ribosomal large subunit pseudouridine sy...   181   2e-44 
ref|ZP_01064028.1|  putative ribosomal large chain pseudouri...   181   2e-44 
ref|ZP_01612711.1|  ribosomal large subunit pseudouridine sy...   180   4e-44 
gb|EAY35073.1|  ribosomal large subunit pseudouridine syntha...   179   7e-44 
ref|YP_267294.1|  RNA pseudouridine synthase family protein ...   179   7e-44 
ref|YP_114042.1|  ribosomal large subunit pseudouridine synt...   179   7e-44 
ref|ZP_00990524.1|  putative ribosomal large chain pseudouri...   177   4e-43 
ref|ZP_01578343.1|  pseudouridine synthase [Delftia acidovor...   176   1e-42 
ref|YP_749577.1|  pseudouridine synthase [Shewanella frigidi...   174   3e-42 
ref|ZP_01463560.1|  ribosomal large subunit pseudouridine sy...   173   6e-42 
ref|ZP_01261412.1|  putative ribosomal large chain pseudouri...   172   1e-41 
ref|NP_799572.1|  putative ribosomal large chain pseudouridi...   172   1e-41 
ref|ZP_01476679.1|  hypothetical protein VEx2w_02000687 [Vib...   172   1e-41 
ref|ZP_01518688.1|  pseudouridine synthase [Comamonas testos...   172   1e-41 
ref|ZP_01075260.1|  putative ribosomal large subunit pseudou...   171   2e-41 
ref|ZP_01598874.1|  pseudouridine synthase [Marinomonas sp. ...   171   2e-41 
ref|ZP_01234065.1|  Pseudouridylate synthase, 23S RNA-specif...   171   3e-41 
ref|ZP_01161240.1|  ribosomal large subunit pseudouridine sy...   170   4e-41 
ref|YP_931518.1|  pseudouridine synthase A [Azoarcus sp. BH7...   170   5e-41 
ref|ZP_01542161.1|  pseudouridine synthase [Shewanella woody...   169   9e-41 
ref|ZP_01134364.1|  ribosomal large subunit pseudouridine sy...   169   9e-41 
ref|ZP_01131800.1|  putative 23S rRNA pseudouridylate 746 sy...   169   9e-41 
ref|NP_763216.1|  Pseudouridylate synthase, 23S RNA-specific...   168   2e-40 
ref|YP_986189.1|  pseudouridine synthase [Acidovorax sp. JS4...   167   3e-40 
ref|YP_856003.1|  ribosomal large subunit pseudouridine synt...   166   6e-40 
ref|NP_936210.1|  pseudouridylate synthase, 23S RNA-specific...   166   1e-39 
gb|EAY51985.1|  pseudouridine synthase [Shewanella putrefaci...   165   1e-39 
ref|YP_206443.1|  ribosomal large subunit pseudouridine synt...   165   1e-39 
ref|YP_964534.1|  pseudouridine synthase [Shewanella sp. W3-...   165   1e-39 
ref|ZP_00815772.1|  Pseudouridylate synthase [Shewanella put...   165   1e-39 
ref|ZP_00583643.1|  Pseudouridylate synthase [Shewanella bal...   165   1e-39 
ref|YP_971488.1|  pseudouridine synthase [Acidovorax avenae ...   165   2e-39 
ref|ZP_01435983.1|  pseudouridine synthase [Shewanella balti...   165   2e-39 
ref|YP_265269.1|  probable pseudouridine synthase, 23S rRNA-...   164   2e-39 
ref|YP_561701.1|  pseudouridine synthase [Shewanella denitri...   164   3e-39 
ref|NP_813412.1|  ribosomal large subunit pseudouridine synt...   164   3e-39 
ref|YP_339756.1|  ribosomal large subunit pseudouridine synt...   164   3e-39 
ref|ZP_01605394.1|  pseudouridine synthase [Shewanella peale...   163   5e-39 
ref|ZP_01539621.1|  pseudouridine synthase [Shewanella woody...   163   5e-39 
ref|ZP_01112999.1|  putative 23S rRNA pseudouridylate 746 sy...   163   5e-39 
gb|EAE56233.1|  unknown [environmental sequence]                  162   1e-38 
ref|YP_045902.1|  putative ribosomal large subunit pseudouri...   162   1e-38 
ref|YP_562025.1|  pseudouridine synthase [Shewanella denitri...   160   4e-38 
gb|EAF91113.1|  unknown [environmental sequence]                  159   1e-37 
ref|ZP_00837779.1|  Pseudouridine synthase [Shewanella sp. P...   159   1e-37 
ref|ZP_00110190.1|  COG0564: Pseudouridylate synthases, 23S ...   157   3e-37 
gb|EAG64170.1|  unknown [environmental sequence]                  157   5e-37 
ref|YP_661899.1|  pseudouridine synthase [Pseudoalteromonas ...   157   5e-37 
ref|ZP_01433841.1|  pseudouridine synthase [Shewanella balti...   156   6e-37 
ref|YP_962408.1|  pseudouridine synthase [Shewanella sp. W3-...   156   6e-37 
ref|YP_581552.1|  pseudouridine synthase [Psychrobacter cryo...   155   1e-36 
ref|ZP_00582812.1|  Pseudouridylate synthase [Shewanella bal...   155   1e-36 
ref|ZP_01612453.1|  putative 23S rRNA pseudouridylate 746 sy...   155   2e-36 
ref|ZP_01202673.1|  ribosomal large subunit pseudouridine sy...   155   2e-36 
ref|YP_098425.1|  ribosomal large subunit pseudouridine synt...   154   2e-36 
ref|ZP_01053638.1|  ribosomal large subunit pseudouridine sy...   154   2e-36 
ref|ZP_00812880.1|  Pseudouridylate synthase [Shewanella put...   154   2e-36 
ref|ZP_01117418.1|  ribosomal large subunit pseudouridine sy...   154   3e-36 
ref|ZP_01588429.1|  pseudouridine synthase [Enterobacter sp....   153   5e-36 
ref|ZP_01451572.1|  pseudouridylate synthase, 23S RNA-specif...   153   5e-36 
ref|YP_634154.1|  ribosomal large subunit pseudouridine synt...   153   5e-36 
ref|ZP_01272768.1|  Pseudouridine synthase [Psychrobacter sp...   153   5e-36 
ref|ZP_01062575.1|  ribosomal large subunit pseudouridine sy...   153   5e-36 
ref|ZP_01602152.1|  pseudouridine synthase [Shewanella peale...   153   7e-36 
ref|ZP_00990882.1|  ribosomal large subunit pseudouridine sy...   152   1e-35 
gb|EAJ80724.1|  unknown [environmental sequence]                  152   2e-35 
ref|YP_210739.1|  putative ribosomal large subunit pseudouri...   152   2e-35 
ref|ZP_00834406.1|  COG0564: Pseudouridylate synthases, 23S ...   151   2e-35 
ref|YP_323641.1|  Pseudouridine synthase [Anabaena variabili...   151   3e-35 
ref|YP_066845.1|  ribosomal large subunit pseudouridine synt...   151   3e-35 
ref|NP_488120.1|  ribosomal large chain pseudouridine syntha...   150   3e-35 
ref|ZP_01632778.1|  ribosomal large chain pseudouridine synt...   150   6e-35 
ref|YP_339724.1|  23S rRNA pseudouridylate synthase [Pseudoa...   149   1e-34 
ref|ZP_00826208.1|  COG0564: Pseudouridylate synthases, 23S ...   148   2e-34 
ref|ZP_00828115.1|  COG0564: Pseudouridylate synthases, 23S ...   147   3e-34 
ref|ZP_01535373.1|  pseudouridine synthase [Serratia proteam...   146   6e-34 
ref|YP_206442.1|  ribosomal large subunit pseudouridine synt...   146   6e-34 
ref|ZP_00823127.1|  COG0564: Pseudouridylate synthases, 23S ...   144   2e-33 
ref|YP_170892.1|  ribosomal large subunit pseudouridine synt...   144   4e-33 
ref|YP_001006830.1|  putative ribosomal large subunit pseudo...   141   3e-32 
gb|EAG39888.1|  unknown [environmental sequence]                  139   8e-32 
ref|ZP_01459901.1|  pseudouridylate synthase, 23S RNA-specif...   139   8e-32 
gb|EAJ34081.1|  unknown [environmental sequence]                  137   5e-31 
ref|ZP_01470344.1|  putative pseudouridylate synthase [Synec...   136   7e-31 
ref|ZP_01652513.1|  pseudouridine synthase, RluA family [The...   136   9e-31 
ref|NP_228272.1|  hypothetical protein TM0462 [Thermotoga ma...   135   2e-30 
ref|ZP_01304185.1|  pseudouridylate synthase [Sphingomonas s...   130   5e-29 
ref|YP_102984.1|  ribosomal large subunit pseudouridine synt...   130   6e-29 
ref|ZP_00440109.1|  COG0564: Pseudouridylate synthases, 23S ...   130   6e-29 
ref|YP_108152.1|  putative ribosomal large subunit pseudouri...   129   8e-29 
ref|ZP_01323798.1|  hypothetical protein BpseP_03002420 [Bur...   129   8e-29 
ref|ZP_00487187.1|  COG0564: Pseudouridylate synthases, 23S ...   129   8e-29 
ref|YP_442774.1|  ribosomal large subunit pseudouridine synt...   129   1e-28 
ref|ZP_01157813.1|  ribosomal large subunit pseudouridine sy...   129   1e-28 
ref|ZP_01418209.1|  Pseudouridine synthase, RluD [Caulobacte...   129   1e-28 
gb|EAF43476.1|  unknown [environmental sequence]                  128   2e-28 
ref|YP_412663.1|  Pseudouridine synthase, RluD [Nitrosospira...   128   2e-28 
ref|ZP_01318120.1|  hypothetical protein Bpse1_03002464 [Bur...   128   2e-28 
ref|YP_744403.1|  ribosomal large subunit pseudouridine synt...   127   3e-28 
ref|NP_840590.1|  rluD; ribosomal large subunit pseudouridin...   127   3e-28 
ref|YP_314568.1|  pseudouridine synthase, RluD [Thiobacillus...   127   4e-28 
ref|ZP_01609141.1|  pseudouridine synthase, RluA family [Sph...   127   5e-28 
ref|YP_192062.1|  Ribosomal large subunit pseudouridine synt...   127   5e-28 
ref|ZP_01571004.1|  pseudouridine synthase, RluA family [Bur...   125   1e-27 
ref|YP_712437.1|  Pseudouridylate synthase [Frankia alni ACN...   125   1e-27 
ref|YP_427743.1|  Pseudouridine synthase, RluD [Rhodospirill...   125   2e-27 
ref|YP_617144.1|  Pseudouridine synthase, RluD [Sphingopyxis...   125   2e-27 
ref|YP_351793.1|  Pseudouridine synthase [Rhodobacter sphaer...   124   3e-27 
ref|YP_583505.1|  Pseudouridine synthase, RluD [Ralstonia me...   124   3e-27 
ref|YP_595188.1|  Pseudouridylate synthases, 23S RNA-specifi...   124   3e-27 
ref|YP_457158.1|  pseudouridylate synthase [Erythrobacter li...   124   3e-27 
ref|ZP_01665544.1|  pseudouridine synthase, RluA family [The...   124   5e-27 
ref|ZP_01557755.1|  pseudouridine synthase, RluA family [Bur...   124   5e-27 
ref|YP_747449.1|  pseudouridine synthase, RluA family protei...   124   5e-27 
ref|YP_369332.1|  Pseudouridine synthase, RluD [Burkholderia...   124   5e-27 
ref|ZP_00979697.1|  COG0564: Pseudouridylate synthases, 23S ...   124   5e-27 
ref|ZP_00916668.1|  Pseudouridine synthase, RluD [Rhodobacte...   124   5e-27 
ref|YP_773621.1|  pseudouridine synthase, RluA family [Burkh...   124   5e-27 
ref|YP_626122.1|  Pseudouridine synthase, RluD [Burkholderia...   124   5e-27 
ref|ZP_01664706.1|  Pseudouridylate synthase [Ralstonia pick...   123   6e-27 
ref|ZP_00942938.1|  Ribosomal large subunit pseudouridine sy...   123   6e-27 
gb|EAH94892.1|  unknown [environmental sequence]                  123   8e-27 
ref|ZP_01450747.1|  ribosomal large subunit pseudouridine sy...   123   8e-27 
ref|YP_725937.1|  pseudouridylate synthase, 23S RNA-specific...   123   8e-27 
ref|ZP_00915062.1|  Pseudouridine synthase, RluD [Rhodobacte...   123   8e-27 
ref|YP_182086.1|  ribosomal large subunit pseudouridine synt...   122   1e-26 
ref|NP_420787.1|  ribosomal large subunit pseudouridine synt...   122   1e-26 
ref|NP_420097.1|  ribosomal large subunit pseudouridine synt...   122   1e-26 
ref|ZP_00421641.1|  Pseudouridine synthase, RluD [Burkholder...   122   1e-26 
ref|ZP_01225648.1|  ribosomal large subunit pseudouridine sy...   122   1e-26 
ref|YP_463409.1|  Pseudouridine synthase, RluD [Anaeromyxoba...   122   1e-26 
ref|ZP_01512841.1|  pseudouridine synthase, RluA family [Bur...   122   2e-26 
ref|ZP_00055361.1|  COG0564: Pseudouridylate synthases, 23S ...   122   2e-26 
gb|EAD58836.1|  unknown [environmental sequence]                  121   2e-26 
ref|ZP_01564618.1|  pseudouridine synthase, RluA family [Bur...   121   2e-26 
ref|YP_592420.1|  Pseudouridine synthase, RluD [Acidobacteri...   121   2e-26 
ref|NP_519749.1|  PROBABLE RIBOSOMAL LARGE SUBUNIT PSEUDOURI...   121   2e-26 
ref|ZP_00568836.1|  Pseudouridine synthase, RluD [Frankia sp...   121   2e-26 
ref|YP_480532.1|  Pseudouridine synthase, RluD [Frankia sp. ...   120   4e-26 
gb|EAK22043.1|  unknown [environmental sequence]                  120   5e-26 
ref|YP_558676.1|  Pseudouridine synthase, RluD [Burkholderia...   120   5e-26 
ref|ZP_01038734.1|  pseudouridylate synthase [Erythrobacter ...   120   5e-26 
ref|ZP_00986582.1|  COG0564: Pseudouridylate synthases, 23S ...   120   5e-26 
ref|ZP_01477453.1|  hypothetical protein VchoM_02003424 [Vib...   120   5e-26 
ref|ZP_01484678.1|  hypothetical protein VchoV5_02002728 [Vi...   120   5e-26 
ref|NP_231662.1|  ribosomal large subunit pseudouridine synt...   120   5e-26 
ref|YP_967412.1|  pseudouridine synthase, RluA family [Desul...   120   7e-26 
ref|YP_150901.1|  ribosomal large subunit pseudouridine synt...   120   7e-26 
ref|NP_901862.1|  pseudouridine synthase D [Chromobacterium ...   120   7e-26 
ref|YP_001003801.1|  pseudouridine synthase, RluA family [Ha...   120   7e-26 
ref|YP_730201.1|  pseudouridine synthase RluA PA3246 [Synech...   119   9e-26 
ref|YP_010245.1|  ribosomal large subunit pseudouridine synt...   119   9e-26 
ref|ZP_01092084.1|  ribosomal large subunit pseudouridine sy...   119   9e-26 
ref|ZP_00948473.1|  ribosomal large subunit pseudouridine sy...   119   9e-26 
gb|EAG85460.1|  unknown [environmental sequence]                  119   1e-25 
ref|YP_360337.1|  ribosomal large subunit pseudouridine synt...   119   1e-25 
ref|ZP_00959229.1|  ribosomal large subunit pseudouridine sy...   119   1e-25 
ref|ZP_01577709.1|  pseudouridine synthase, RluA family [Del...   119   1e-25 
ref|ZP_01500464.1|  pseudouridine synthase, RluA family [Bur...   119   1e-25 
ref|YP_629678.1|  pseudouridine synthase, RluA family [Myxoc...   119   1e-25 
ref|YP_062428.1|  ribosomal large subunit pseudouridine synt...   119   1e-25 
ref|YP_162174.1|  pseudouridylate synthase [Zymomonas mobili...   119   1e-25 
ref|YP_308298.1|  ribosomal large subunit pseudouridine synt...   119   1e-25 
ref|YP_872791.1|  pseudouridine synthase, RluA family [Acido...   119   1e-25 
ref|ZP_01003025.1|  ribosomal large subunit pseudouridine sy...   119   1e-25 
ref|YP_866039.1|  pseudouridine synthase, RluA family [Magne...   119   1e-25 
ref|ZP_01418213.1|  Pseudouridine synthase [Caulobacter sp. ...   118   2e-25 
ref|YP_295558.1|  Pseudouridine synthase, RluD [Ralstonia eu...   118   2e-25 
ref|YP_216121.1|  23S rRNA pseudouridylate synthase [Salmone...   118   2e-25 
ref|YP_422549.1|  Pseudouridylate synthase, 23S RNA-specific...   118   2e-25 
ref|NP_455681.1|  ribosomal large subunit pseudouridine synt...   118   2e-25 
ref|ZP_01131177.1|  ribosomal large subunit pseudouridine sy...   118   2e-25 
ref|ZP_00591534.1|  Pseudouridine synthase, RluD [Prosthecoc...   118   2e-25 
ref|ZP_01524489.1|  Pseudouridine synthase, RluD [Fervidobac...   118   2e-25 
ref|ZP_01459661.1|  ribosomal large subunit pseudouridine sy...   118   2e-25 
ref|ZP_01437585.1|  ribosomal large subunit pseudouridine sy...   118   2e-25 
ref|NP_460157.1|  23S rRNA pseudouridylate synthase [Salmone...   118   2e-25 
ref|ZP_00731914.1|  Pseudouridylate synthase [Actinobacillus...   118   2e-25 
ref|YP_404367.1|  suppressor of ftsH mutation [Shigella dyse...   117   3e-25 
ref|YP_089633.1|  ribosomal large subunit pseudouridine synt...   117   3e-25 
ref|NP_539900.1|  RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNT...   117   3e-25 
ref|YP_221716.1|  ribosomal large subunit pseudouridine synt...   117   3e-25 
ref|YP_066466.1|  similar to ribosomal large subunit pseudou...   117   3e-25 
ref|ZP_01612846.1|  23S rRNA pseudouridine synthase [Alterom...   117   4e-25 
ref|YP_382227.1|  putative pseudouridylate synthase [Synecho...   117   4e-25 
ref|YP_286069.1|  Pseudouridine synthase [Dechloromonas arom...   117   4e-25 
pdb|1XPI|A  Chain A, Crystal Structure Of The Catalytic Doma...   117   4e-25 
ref|NP_761816.1|  Ribosomal large subunit pseudouridine synt...   117   4e-25 
ref|NP_287220.1|  hypothetical protein Z1725 [Escherichia co...   117   4e-25 
ref|NP_753266.1|  Ribosomal large subunit pseudouridine synt...   117   4e-25 
ref|NP_415604.1|  23S rRNA pseudouridylate synthase [Escheri...   117   4e-25 
ref|YP_498107.1|  Pseudouridine synthase, RluD [Novosphingob...   117   6e-25 
ref|YP_310066.1|  hypothetical protein SSON_1106 [Shigella s...   117   6e-25 
ref|YP_089013.1|  RluA protein [Mannheimia succiniciproducen...   117   6e-25 
ref|NP_934061.1|  23S rRNA ribosomal pseudouridine synthase ...   117   6e-25 
ref|ZP_01189874.1|  Pseudouridine synthase, RluD [Halothermo...   117   6e-25 
ref|ZP_00054336.2|  COG0564: Pseudouridylate synthases, 23S ...   117   6e-25 
ref|YP_802776.1|  RluC [Buchnera aphidicola str. Cc (Cinara ...   116   7e-25 
ref|YP_718577.1|  pseudouridylate synthase D, large subunit ...   116   7e-25 
ref|YP_129400.1|  putative 23S rRNA ribosomal pseudouridines...   116   7e-25 
ref|ZP_01146218.1|  Pseudouridine synthase, RluD [Acidiphili...   116   7e-25 
ref|ZP_01122219.1|  ribosomal large subunit pseudouridine sy...   116   7e-25 
ref|ZP_00779243.1|  Pseudouridine synthase, RluD [Thermoanae...   116   7e-25 
ref|ZP_00132277.2|  COG0564: Pseudouridylate synthases, 23S ...   116   7e-25 
ref|YP_974746.1|  putative ribosomal large subunit pseudouri...   116   9e-25 
ref|YP_519098.1|  hypothetical protein DSY2865 [Desulfitobac...   116   9e-25 
ref|NP_930074.1|  ribosomal large subunit pseudouridine synt...   116   9e-25 
gb|EAC34468.1|  unknown [environmental sequence]                  115   1e-24 
ref|ZP_01669141.1|  pseudouridine synthase, RluA family [Ana...   115   1e-24 
ref|ZP_01454263.1|  Pseudouridine synthase, RluD [Thermoanae...   115   1e-24 
ref|YP_429729.1|  Pseudouridine synthase, RluD [Moorella the...   115   1e-24 
ref|YP_131151.1|  putative ribosomal large subunit pseudouri...   115   1e-24 
ref|ZP_01675076.1|  pseudouridine synthase, RluA family [Can...   115   2e-24 
ref|ZP_01584312.1|  pseudouridine synthase, RluA family [Din...   115   2e-24 
ref|ZP_01163424.1|  Pseudouridine synthase, RluD [Lactobacil...   115   2e-24 
ref|ZP_01450382.1|  ribosomal large subunit pseudouridine sy...   115   2e-24 
ref|YP_985471.1|  pseudouridine synthase, RluA family [Acido...   115   2e-24 
ref|ZP_01274846.1|  Pseudouridine synthase, RluD [Lactobacil...   115   2e-24 
ref|YP_572558.1|  Pseudouridine synthase, RluD [Chromohaloba...   115   2e-24 
ref|YP_408395.1|  hypothetical protein SBO_1977 [Shigella bo...   115   2e-24 
ref|YP_403651.1|  hypothetical protein SDY_2065 [Shigella dy...   115   2e-24 
ref|NP_289149.1|  suppressor of ftsH mutation [Escherichia c...   115   2e-24 
ref|ZP_01657934.1|  Pseudouridylate synthase [Parvibaculum l...   114   3e-24 
ref|ZP_01221243.1|  putative 23S rRNA ribosomal pseudouridin...   114   3e-24 
ref|YP_535719.1|  Ribosomal large subunit pseudouridine synt...   114   3e-24 
ref|YP_205130.1|  ribosomal large subunit pseudouridine synt...   114   3e-24 
ref|NP_532161.1|  ribosomal large subunit pseudouridine synt...   114   3e-24 
ref|YP_270573.1|  ribosomal large subunit pseudouridine synt...   114   3e-24 
ref|YP_207440.1|  RluD [Neisseria gonorrhoeae FA 1090] >gi|5...   114   3e-24 
ref|NP_354476.1|  hypothetical protein AGR_C_2714 [Agrobacte...   114   3e-24 
ref|YP_395560.1|  Pseudouridylate synthase, 23S rRNA-specifi...   114   3e-24 
ref|NP_283696.1|  ribosomal large subunit pseudouridine synt...   114   3e-24 
ref|NP_311484.1|  suppressor of ftsH mutation [Escherichia c...   114   3e-24 
ref|ZP_00700610.1|  COG0564: Pseudouridylate synthases, 23S ...   114   3e-24 
ref|NP_708442.1|  ftsH mutation suppressor [Shigella flexner...   114   3e-24 
ref|YP_853731.1|  23S rRNA pseudouridine synthase [Escherich...   114   4e-24 
ref|YP_541914.1|  ribosomal large subunit pseudouridine synt...   114   4e-24 
pdb|1V9F|A  Chain A, Crystal Structure Of Catalytic Domain O...   114   4e-24 
ref|NP_894943.1|  putative pseudouridylate synthase [Prochlo...   114   4e-24 
ref|ZP_00698262.1|  COG0564: Pseudouridylate synthases, 23S ...   114   4e-24 
ref|NP_417085.1|  23S rRNA pseudouridine synthase [Escherich...   114   4e-24 
gb|EAK45232.1|  unknown [environmental sequence]                  114   5e-24 
ref|YP_878025.1|  ribosomal large subunit pseudouridine synt...   114   5e-24 
ref|YP_203947.1|  ribosomal large subunit pseudouridine synt...   114   5e-24 
ref|NP_738642.1|  putative ribosomal large subunit pseudouri...   114   5e-24 
ref|NP_273746.1|  ribosomal large subunit pseudouridine synt...   114   5e-24 
ref|NP_240167.1|  ribosomal large subunit pseudouridine synt...   114   5e-24 
ref|ZP_01143912.1|  Pseudouridine synthase, RluD [Acidiphili...   114   5e-24 
ref|ZP_01104748.1|  Ribosomal large subunit pseudouridine sy...   114   5e-24 
ref|ZP_01013283.1|  ribosomal large subunit pseudouridine sy...   114   5e-24 
ref|ZP_00993060.1|  23S rRNA ribosomal pseudouridine synthas...   114   5e-24 
gb|EAK31841.1|  unknown [environmental sequence]                  113   6e-24 
ref|YP_903578.1|  pseudouridine synthase, RluA family [Candi...   113   6e-24 
ref|ZP_01538823.1|  pseudouridine synthase, RluA family [Ser...   113   6e-24 
ref|YP_850458.1|  ribosomal large subunit pseudouridine synt...   113   6e-24 
ref|ZP_01331285.1|  hypothetical protein BpseS_03000778 [Bur...   113   6e-24 
pdb|1V9K|A  Chain A, The Crystal Structure Of The Catalytic ...   113   6e-24 
ref|NP_798440.1|  23S rRNA ribosomal pseudouridine synthase ...   113   6e-24 
ref|NP_385495.1|  PROBABLE RIBOSOMAL LARGE SUBUNIT PSEUDOURI...   113   6e-24 
ref|ZP_01166499.1|  pseudouridine synthase [Oceanospirillum ...   113   6e-24 
ref|ZP_01034951.1|  ribosomal large subunit pseudouridine sy...   113   6e-24 
ref|YP_660915.1|  pseudouridine synthase, RluA family [Pseud...   113   6e-24 
ref|ZP_00628207.1|  Pseudouridine synthase, RluD [Paracoccus...   113   6e-24 
ref|YP_605689.1|  Pseudouridine synthase, RluD [Deinococcus ...   113   6e-24 
ref|ZP_00617467.1|  Pseudouridine synthase, RluD [Kineococcu...   113   6e-24 
ref|YP_761328.1|  pseudouridine synthase family protein [Hyp...   113   8e-24 
ref|ZP_01261774.1|  23S rRNA ribosomal pseudouridine synthas...   113   8e-24 
ref|ZP_01216632.1|  Ribosomal large subunit pseudouridine sy...   113   8e-24 
ref|YP_462733.1|  ribosomal large subunit pseudouridine synt...   113   8e-24 
ref|YP_339455.1|  pseudouridine synthase [Pseudoalteromonas ...   113   8e-24 
ref|ZP_01197661.1|  Pseudouridine synthase, RluD [Xanthobact...   113   8e-24 
ref|ZP_01475066.1|  hypothetical protein VEx2w_02002305 [Vib...   113   8e-24 
ref|YP_768151.1|  putative ribosomal large subunit pseudouri...   112   1e-23 
ref|ZP_01451053.1|  ribosomal large subunit pseudouridine sy...   112   1e-23 
ref|YP_153766.1|  ribosomal large subunit pseudouridine synt...   112   1e-23 
ref|NP_977643.1|  ribosomal large subunit pseudouridine synt...   112   1e-23 
sp|Q47417|TRUC_PECCC  tRNA pseudouridine synthase C (tRNA-ur...   112   1e-23 
ref|ZP_00739872.1|  Ribosomal large subunit pseudouridine sy...   112   1e-23 
ref|ZP_01591408.1|  pseudouridine synthase, RluA family [Ent...   112   1e-23 
ref|ZP_01548543.1|  ribosomal large subunit pseudouridine sy...   112   1e-23 
ref|YP_893930.1|  ribosomal large subunit pseudouridylate sy...   112   1e-23 
ref|YP_469743.1|  pseudouridylate synthase, ribosomal large ...   112   1e-23 
ref|YP_035440.1|  ribosomal large subunit pseudouridylate sy...   112   1e-23 
ref|YP_426199.1|  Pseudouridine synthase, RluD [Rhodospirill...   112   1e-23 
ref|ZP_01190661.1|  Pseudouridine synthase, RluD [Mycobacter...   112   1e-23 
ref|YP_644256.1|  Pseudouridine synthase, RluD [Rubrobacter ...   112   1e-23 
ref|YP_001016946.1|  putative pseudouridylate synthase [Proc...   112   2e-23 
ref|YP_944551.1|  pseudouridine synthase, RluA family protei...   112   2e-23 
ref|NP_827309.1|  ribosomal large subunit pseudouridine synt...   112   2e-23 
ref|YP_055482.1|  pseudouridylate synthase [Propionibacteriu...   112   2e-23 
ref|YP_376747.1|  putative pseudouridylate synthase [Synecho...   112   2e-23 
ref|NP_830985.1|  Ribosomal large subunit pseudouridine synt...   112   2e-23 
ref|YP_033804.1|  Ribosomal large subunit pseudouridine synt...   112   2e-23 
ref|NP_785347.1|  pseudouridylate synthase [Lactobacillus pl...   112   2e-23 
ref|ZP_01111898.1|  ribosomal large subunit pseudouridine sy...   112   2e-23 
ref|YP_743382.1|  pseudouridine synthase, RluA family [Alkal...   112   2e-23 
ref|ZP_00755501.1|  COG0564: Pseudouridylate synthases, 23S ...   112   2e-23 
ref|ZP_01369846.1|  pseudouridine synthase, RluA family [Des...   112   2e-23 
ref|YP_809039.1|  Pseudouridylate synthase, 23S RNA-specific...   112   2e-23 
ref|NP_230358.1|  ribosomal large subunit pseudouridine synt...   112   2e-23 
emb|CAL98100.1|  ribosomal large subunit pseudouridine synth...   111   2e-23 
ref|ZP_01538383.1|  pseudouridine synthase [Serratia proteam...   111   2e-23 
ref|ZP_01314387.1|  hypothetical protein Wendoof_01000811 [W...   111   2e-23 
ref|ZP_01273058.1|  Pseudouridine synthase, RluD [Psychrobac...   111   2e-23 
ref|YP_533262.1|  Pseudouridine synthase, RluD [Rhodopseudom...   111   2e-23 
ref|NP_966205.1|  ribosomal large subunit pseudouridine synt...   111   2e-23 
ref|ZP_00862659.1|  Pseudouridine synthase, RluD [Bradyrhizo...   111   2e-23 
ref|YP_912078.1|  pseudouridine synthase, RluA family [Chlor...   111   2e-23 
ref|ZP_00373428.1|  ribosomal large subunit pseudouridine sy...   111   2e-23 
ref|ZP_01576235.1|  pseudouridine synthase, RluA family [Clo...   111   3e-23 
ref|YP_675683.1|  pseudouridine synthase, RluA family [Mesor...   111   3e-23 
emb|CAJ73092.1|  similar to ribosomal large subunit pseudour...   111   3e-23 
ref|ZP_01236184.1|  putative ribosomal large subunit pseudou...   111   3e-23 
ref|YP_457125.1|  pseudouridine synthase D large subunit [Er...   111   3e-23 
ref|YP_113936.1|  ribosomal large subunit pseudouridine synt...   111   3e-23 
ref|NP_267154.1|  pseudouridine synthase [Lactococcus lactis...   111   3e-23 
ref|YP_049132.1|  putative RNA pseudouridylate synthase [Erw...   111   3e-23 
ref|NP_441760.1|  hypothetical protein slr1629 [Synechocysti...   111   3e-23 
ref|NP_796938.1|  ribosomal large subunit pseudouridine synt...   111   3e-23 
ref|ZP_01183151.1|  Pseudouridine synthase, RluD [Bacillus w...   111   3e-23 
ref|ZP_01114389.1|  ribosomal large subunit pseudouridine sy...   111   3e-23 
ref|ZP_01051415.1|  ribosomal large subunit pseudouridine sy...   111   3e-23 
ref|ZP_00901894.1|  Pseudouridine synthase, RluD [Pseudomona...   111   3e-23 
ref|YP_782457.1|  pseudouridine synthase, RluA family [Rhodo...   111   3e-23 
ref|ZP_01497747.1|  hypothetical protein YpseI_02002916 [Yer...   111   3e-23 
ref|YP_661705.1|  pseudouridine synthase, RluA family [Pseud...   111   3e-23 
ref|NP_992044.1|  ribosomal large subunit pseudouridine synt...   111   3e-23 
ref|NP_406747.1|  ribosomal large subunit pseudouridine synt...   111   3e-23 
ref|YP_001005232.1|  ribosomal large subunit pseudouridine s...   110   4e-23 
ref|YP_905521.1|  pseudouridine synthase, RluA-family [Mycob...   110   4e-23 
ref|ZP_01468310.1|  putative pseudouridylate synthase [Synec...   110   4e-23 
ref|ZP_01244259.1|  Pseudouridine synthase, RluD [Flavobacte...   110   4e-23 
ref|YP_393125.1|  Pseudouridine synthase [Thiomicrospira den...   110   4e-23 
ref|YP_088264.1|  RluA protein [Mannheimia succiniciproducen...   110   4e-23 
ref|YP_082698.1|  pseudouridylate synthase (pseudouridine sy...   110   4e-23 
ref|NP_295512.1|  ribosomal large subunit pseudouridine synt...   110   4e-23 
ref|NP_607042.1|  hypothetical protein spyM18_0889 [Streptoc...   110   4e-23 
ref|NP_246658.1|  SfB [Pasteurella multocida subsp. multocid...   110   4e-23 
ref|NP_779940.1|  ribosomal large subunit pseudouridine synt...   110   4e-23 
ref|ZP_01112003.1|  ribosomal large subunit pseudouridine sy...   110   4e-23 
ref|ZP_01107140.1|  ribosomal large subunit pseudouridine sy...   110   4e-23 
ref|YP_001005917.1|  ribosomal large subunit pseudouridine s...   110   5e-23 
ref|YP_947480.1|  putative RNA pseudouridine synthase, RluA ...   110   5e-23 
ref|YP_928477.1|  pseudouridylate synthase [Shewanella amazo...   110   5e-23 
ref|ZP_01607918.1|  pseudouridine synthase, RluA family [Sph...   110   5e-23 
ref|ZP_01529188.1|  pseudouridine synthase, RluA family [Pse...   110   5e-23 
ref|ZP_01415474.1|  probable ribosomal large subunit pseudou...   110   5e-23 
ref|ZP_01276756.1|  Pseudouridine synthase, RluD [Mycobacter...   110   5e-23 
ref|YP_640255.1|  Pseudouridine synthase, RluD [Mycobacteriu...   110   5e-23 
gb|AAF78056.1|AF263561_1  23S rRNA pseudouridine synthase [s...   110   5e-23 
ref|NP_623145.1|  Pseudouridylate synthase, 23S RNA-specific...   110   5e-23 
ref|NP_923019.1|  probable pseudouridine synthase [Gloeobact...   110   5e-23 
ref|NP_601339.1|  23S RNA-specific pseudouridylate synthase ...   110   5e-23 
ref|ZP_01161480.1|  putative ribosomal large subunit pseudou...   110   5e-23 
ref|ZP_01044230.1|  Predicted pseudouridylate synthase, Rlu ...   110   5e-23 
ref|ZP_00783442.1|  ribosomal large subunit pseudouridine sy...   110   5e-23 
ref|ZP_00052441.1|  COG0564: Pseudouridylate synthases, 23S ...   110   5e-23 
ref|YP_718926.1|  ribosomal large subunit pseudouridine synt...   110   5e-23 
gb|EAB52884.1|  unknown [environmental sequence]                  110   7e-23 
ref|ZP_01645154.1|  pseudouridine synthase, RluA family [Ste...   110   7e-23 
ref|ZP_01448659.1|  ribosomal large subunit pseudouridine sy...   110   7e-23 
ref|YP_744670.1|  ribosomal large subunit pseudouridine synt...   110   7e-23 
ref|YP_701057.1|  pseudouridylate synthase [Rhodococcus sp. ...   110   7e-23 
ref|YP_277920.1|  ribosomal large subunit (23S) pseudouridin...   110   7e-23 
ref|YP_033223.1|  Ribosomal large subunit pseudouridine synt...   110   7e-23 
ref|NP_939925.1|  Putative pseudouridine synthase [Corynebac...   110   7e-23 
ref|NP_933506.1|  pseudouridylate synthase, 23S RNA-specific...   110   7e-23 
ref|NP_471677.1|  hypothetical protein lin2346 [Listeria inn...   110   7e-23 
ref|NP_735872.1|  hypothetical protein gbs1435 [Streptococcu...   110   7e-23 
ref|NP_457133.1|  ftsH suppressor protein SfhB [Salmonella e...   110   7e-23 
ref|NP_759476.1|  Pseudouridylate synthase, 23S RNA-specific...   110   7e-23 
ref|ZP_00824296.1|  COG0564: Pseudouridylate synthases, 23S ...   110   7e-23 
ref|ZP_00239109.1|  ribosomal large subunit pseudouridine sy...   110   7e-23 
ref|ZP_00133095.1|  COG0564: Pseudouridylate synthases, 23S ...   110   7e-23 
gb|EAJ01337.1|  unknown [environmental sequence]                  109   9e-23 
ref|YP_932969.1|  hypothetical protein azo1465 [Azoarcus sp....   109   9e-23 
ref|YP_882412.1|  ribosomal large subunit pseudouridine synt...   109   9e-23 
ref|ZP_01427306.1|  pseudouridine synthase [Herpetosiphon au...   109   9e-23 
ref|ZP_01360613.1|  Pseudouridine synthase, RluD [Clostridiu...   109   9e-23 
ref|YP_508566.1|  Pseudouridine synthase, RluD [Jannaschia s...   109   9e-23 
ref|NP_960185.1|  hypothetical protein MAP1251 [Mycobacteriu...   109   9e-23 
ref|YP_162485.1|  pseudouridine synthase D large subunit [Zy...   109   9e-23 
ref|NP_212152.1|  hypothetical protein BB0018 [Borrelia burg...   109   9e-23 
ref|NP_465768.1|  hypothetical protein lmo2244 [Listeria mon...   109   9e-23 
sp|P70870|RLUD_BORBU  Ribosomal large subunit pseudouridine ...   109   9e-23 
ref|YP_988611.1|  pseudouridine synthase, RluA family [Barto...   109   9e-23 
ref|ZP_01066226.1|  23S rRNA ribosomal pseudouridine synthas...   109   9e-23 
ref|ZP_01066731.1|  ribosomal large subunit pseudouridine sy...   109   9e-23 
ref|ZP_00992349.1|  ribosomal large subunit pseudouridine sy...   109   9e-23 
ref|ZP_00827768.1|  COG0564: Pseudouridylate synthases, 23S ...   109   9e-23 
ref|ZP_00820806.1|  COG0564: Pseudouridylate synthases, 23S ...   109   9e-23 
ref|ZP_00681068.1|  Pseudouridine synthase, RluD [Xylella fa...   109   9e-23 
ref|ZP_00234442.1|  ribosomal large subunit pseudouridine sy...   109   9e-23 
ref|YP_014866.1|  ribosomal large subunit pseudouridine synt...   109   9e-23 
ref|ZP_01658572.1|  pseudouridine synthase, RluD [Parvibacul...   109   1e-22 
ref|YP_709458.1|  hypothetical protein BAPKO_0017 [Borrelia ...   109   1e-22 
ref|YP_598303.1|  Ribosomal large subunit pseudouridine synt...   109   1e-22 
ref|YP_562554.1|  Pseudouridylate synthase [Shewanella denit...   109   1e-22 
ref|ZP_01234901.1|  putative 23S rRNA ribosomal pseudouridin...   109   1e-22 
ref|YP_027393.1|  pseudouridine synthetase [Bacillus anthrac...   109   1e-22 
ref|NP_721264.1|  putative pseudouridylate synthase [Strepto...   109   1e-22 
ref|NP_269039.1|  hypothetical protein SPy0827 [Streptococcu...   109   1e-22 
ref|NP_664361.1|  putative ribosomal large subunit pseudouri...   109   1e-22 
ref|NP_786057.1|  pseudouridylate synthase [Lactobacillus pl...   109   1e-22 
ref|ZP_01149637.1|  Pseudouridine synthase, RluD [Desulfotom...   109   1e-22 
ref|ZP_01132629.1|  pseudouridine synthase [Pseudoalteromona...   109   1e-22 
ref|ZP_00831748.1|  COG0564: Pseudouridylate synthases, 23S ...   109   1e-22 
ref|YP_330006.1|  ribosomal large subunit pseudouridine synt...   109   1e-22 
ref|YP_847762.1|  pseudouridine synthase, RluA family [Syntr...   109   1e-22 
ref|ZP_00391536.1|  COG0564: Pseudouridylate synthases, 23S ...   109   1e-22 
ref|ZP_00134463.2|  COG0564: Pseudouridylate synthases, 23S ...   109   1e-22 
ref|ZP_00052228.1|  COG0564: Pseudouridylate synthases, 23S ...   109   1e-22 
ref|ZP_00652717.1|  Pseudouridine synthase, RluD [Xylella fa...   109   1e-22 
ref|NP_688363.1|  ribosomal large subunit pseudouridine synt...   109   1e-22 
gb|EAJ94679.1|  unknown [environmental sequence]                  108   2e-22 
ref|YP_001008606.1|  putative pseudouridylate synthase speci...   108   2e-22 
ref|YP_953587.1|  pseudouridine synthase, RluA family [Mycob...   108   2e-22 
ref|ZP_01597534.1|  pseudouridine synthase, RluA family [Mar...   108   2e-22 
ref|ZP_01445793.1|  ribosomal large subunit pseudouridine sy...   108   2e-22 
dbj|GAA02025.1|  unnamed protein product [Pelotomaculum ther...   108   2e-22 
ref|YP_600301.1|  Ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|ZP_01261922.1|  ribosomal large subunit pseudouridine sy...   108   2e-22 
ref|YP_284823.1|  Pseudouridine synthase, RluD [Dechloromona...   108   2e-22 
ref|YP_089634.1|  ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|YP_222320.1|  ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|YP_146418.1|  ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|NP_928579.1|  ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|NP_438344.1|  SfhB [Haemophilus influenzae Rd KW20] >gi|...   108   2e-22 
ref|NP_386831.1|  PUTATIVE RIBOSOMAL LARGE SUBUNIT PSEUDOURI...   108   2e-22 
dbj|BAB13516.1|  pseudouridine synthase homolog [Sinorhizobi...   108   2e-22 
ref|NP_298229.1|  ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|ZP_00830474.1|  COG0564: Pseudouridylate synthases, 23S ...   108   2e-22 
ref|ZP_00822166.1|  COG0564: Pseudouridylate synthases, 23S ...   108   2e-22 
ref|YP_958161.1|  pseudouridine synthase, RluA family [Marin...   108   2e-22 
ref|ZP_01474369.1|  hypothetical protein VEx2w_02003074 [Vib...   108   2e-22 
ref|ZP_00156017.2|  COG0564: Pseudouridylate synthases, 23S ...   108   2e-22 
ref|ZP_00135229.2|  COG0564: Pseudouridylate synthases, 23S ...   108   2e-22 
ref|YP_674208.1|  pseudouridine synthase, RluA family [Mesor...   108   2e-22 
ref|ZP_00154705.1|  COG0564: Pseudouridylate synthases, 23S ...   108   2e-22 
ref|ZP_01671533.1|  pseudouridine synthase [Anaeromyxobacter...   108   2e-22 
ref|ZP_01493879.1|  Pseudouridine synthase, RluD [Polynucleo...   108   2e-22 
ref|YP_806678.1|  Pseudouridylate synthase, 23S RNA-specific...   108   2e-22 
ref|YP_629362.1|  RNA pseudouridine synthase family protein ...   108   2e-22 
ref|ZP_01215220.1|  Predicted pseudouridylate synthase, Rlu ...   108   2e-22 
emb|CAA70352.1|  yfiI [Borrelia burgdorferi]                      108   2e-22 
gb|AAT49291.1|  putative bacteriocin [Prevotella nigrescens]      108   2e-22 
ref|YP_247893.1|  ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|YP_155737.1|  Predicted pseudouridylate synthase, Rlu fa...   108   2e-22 
ref|YP_004015.1|  ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|YP_387941.1|  pseudouridine synthase, RluD [Desulfovibri...   108   2e-22 
ref|NP_539294.1|  RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNT...   108   2e-22 
ref|YP_395235.1|  Pseudouridine synthase, 23S-rRNA-specific ...   108   2e-22 
ref|YP_159694.1|  ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|YP_143674.1|  ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|NP_878484.1|  pseudouridine synthase (pseudouridines 191...   108   2e-22 
ref|NP_777935.1|  ribosomal large subunit pseudouridine synt...   108   2e-22 
ref|NP_484566.1|  hypothetical protein alr0522 [Nostoc sp. P...   108   2e-22 
ref|ZP_01159941.1|  putative 23S rRNA ribosomal pseudouridin...   108   2e-22 
ref|ZP_00835405.1|  COG0564: Pseudouridylate synthases, 23S ...   108   2e-22 
ref|ZP_00827412.1|  COG0564: Pseudouridylate synthases, 23S ...   108   2e-22 
gb|EAK12634.1|  unknown [environmental sequence]                  108   3e-22 
ref|ZP_01654635.1|  pseudouridine synthase, RluA family [The...   108   3e-22 
ref|ZP_01647615.1|  pseudouridine synthase, RluA family [Sal...   108   3e-22 
ref|ZP_01605058.1|  pseudouridine synthase, RluA family [She...   108   3e-22 
ref|ZP_01516492.1|  Pseudouridine synthase, RluD [Chloroflex...   108   3e-22 
ref|YP_856764.1|  ribosomal large subunit pseudouridine synt...   108   3e-22 
ref|YP_610132.1|  23S rRNA pseudouridine synthase [Pseudomon...   108   3e-22 
ref|ZP_01215652.1|  pseudouridine synthase Rlu family protei...   108   3e-22 
ref|YP_289184.1|  pseudouridine synthase, RluD [Thermobifida...   108   3e-22 
ref|YP_396051.1|  Pseudouridine synthase, 23S-rRNA-specific ...   108   3e-22 
ref|NP_896830.1|  putative pseudouridylate synthase [Synecho...   108   3e-22 
ref|NP_873181.1|  ribosomal large subunit pseudouridine synt...   108   3e-22 
ref|NP_945721.1|  possible pseudouridine synthase [Rhodopseu...   108   3e-22 
ref|NP_638435.1|  ribosomal large subunit pseudouridine synt...   108   3e-22 
ref|NP_660679.1|  ribosomal large subunit pseudouridine synt...   108   3e-22 
ref|ZP_00133541.1|  COG0564: Pseudouridylate synthases, 23S ...   108   3e-22 
ref|NP_345413.1|  ribosomal large subunit pseudouridine synt...   108   3e-22 
ref|YP_545721.1|  Pseudouridine synthase, RluD [Methylobacil...   107   3e-22 
ref|YP_523563.1|  Pseudouridine synthase, RluD [Rhodoferax f...   107   3e-22 
gb|AAT51150.1|  PA4544 [synthetic construct]                      107   3e-22 
gb|AAP81266.1|  pseudouridine synthase [Pseudomonas aeruginosa]   107   3e-22 
ref|YP_391639.1|  Pseudouridine synthase, RluD [Thiomicrospi...   107   3e-22 
ref|YP_379918.1|  Pseudouridine synthase, RluD [Chlorobium c...   107   3e-22 
ref|YP_273032.1|  Ribosomal large subunit pseudouridine synt...   107   3e-22 
ref|YP_233832.1|  Pseudouridine synthase, RluD [Pseudomonas ...   107   3e-22 
ref|NP_358424.1|  23S rRNA pseudouridine synthase (supresses...   107   3e-22 
ref|YP_031974.1|  Ribosomal large subunit pseudouridine synt...   107   3e-22 
ref|NP_253234.1|  pseudouridine synthase [Pseudomonas aerugi...   107   3e-22 
ref|ZP_00909799.1|  Pseudouridine synthase, RluD [Clostridiu...   107   3e-22 
ref|YP_866865.1|  pseudouridine synthase [Magnetococcus sp. ...   107   3e-22 
ref|ZP_00965517.1|  COG0564: Pseudouridylate synthases, 23S ...   107   3e-22 
gb|EAJ78290.1|  unknown [environmental sequence]                  107   4e-22 
ref|ZP_01536559.1|  pseudouridine synthase, RluA family [Ser...   107   4e-22 
ref|YP_858498.1|  ribosomal large subunit pseudouridine synt...   107   4e-22 
ref|YP_072469.1|  hypothetical protein BG0018 [Borrelia gari...   107   4e-22 
ref|YP_374699.1|  Pseudouridine synthase, RluD [Pelodictyon ...   107   4e-22 
ref|NP_873610.1|  probable pseudouridine synthase Rlu family...   107   4e-22 
ref|ZP_00837912.1|  Pseudouridine synthase, RluD [Shewanella...   107   4e-22 
ref|ZP_00815990.1|  Pseudouridine synthase, RluD [Shewanella...   107   4e-22 
ref|YP_812942.1|  Pseudouridylate synthase, 23S RNA-specific...   107   4e-22 
ref|YP_814828.1|  Pseudouridylate synthase, 23S RNA-specific...   107   4e-22 
ref|ZP_00415578.1|  Pseudouridine synthase, RluD [Azotobacte...   107   4e-22 
ref|ZP_01632353.1|  Pseudouridine synthase, RluD [Nodularia ...   107   6e-22 
gb|ABK79681.1|  ribosomal large subunit pseudouridine syntha...   107   6e-22 
ref|YP_719064.1|  tRNA pseudouridine synthase C [Haemophilus...   107   6e-22 
ref|YP_692196.1|  pseudouridylate synthase [Alcanivorax bork...   107   6e-22 
ref|YP_396693.1|  Pseudouridine synthase, RluD [Prochlorococ...   107   6e-22 
ref|YP_078187.1|  Pseudouridine synthase [Bacillus lichenifo...   107   6e-22 
ref|YP_053630.1|  23S rRNA/tRNA pseudouridine synthase [Meso...   107   6e-22 
ref|NP_902016.1|  probable pseudouridylate synthase [Chromob...   107   6e-22 
ref|NP_874613.1|  23S RNA-specific pseudouridylate synthase ...   107   6e-22 
ref|NP_662187.1|  ribosomal large subunit pseudouridine synt...   107   6e-22 
ref|NP_669067.1|  hypothetical protein y1750 [Yersinia pesti...   107   6e-22 
ref|YP_250546.1|  pseudouridylate synthase [Corynebacterium ...   107   6e-22 
ref|YP_116892.1|  putative RNA pseudouridylate synthase [Noc...   107   6e-22 
ref|NP_895933.1|  putative pseudouridylate synthase specific...   107   6e-22 
ref|NP_245416.1|  hypothetical protein PM0479 [Pasteurella m...   107   6e-22 
sp|Q45826|YMDA_CHLAU  Hypothetical RNA pseudouridine synthas...   107   6e-22 
ref|ZP_01102353.1|  tRNA pseudouridine synthase C [gamma pro...   107   6e-22 
ref|ZP_01042085.1|  Pseudouridylate synthase [Idiomarina bal...   107   6e-22 
ref|ZP_01496294.1|  hypothetical protein YpseI_02001428 [Yer...   107   6e-22 
ref|ZP_00768544.1|  Pseudouridine synthase, RluD [Chloroflex...   107   6e-22 
ref|NP_405172.1|  ribosomal large subunit pseudouridine synt...   107   6e-22 
gb|EAK64174.1|  unknown [environmental sequence]                  106   7e-22 
gb|EAK26300.1|  unknown [environmental sequence]                  106   7e-22 
ref|ZP_01641163.1|  Pseudouridine synthase, RluD [Pseudomona...   106   7e-22 
ref|YP_887490.1|  ribosomal large subunit pseudouridine synt...   106   7e-22 
ref|YP_465074.1|  Pseudouridine synthase [Anaeromyxobacter d...   106   7e-22 
ref|NP_789190.1|  pseudouridine synthase [Tropheryma whipple...   106   7e-22 
ref|YP_485951.1|  Pseudouridine synthase, RluD [Rhodopseudom...   106   7e-22 
ref|NP_787639.1|  pseudouridylate synthase-like protein [Tro...   106   7e-22 
ref|YP_070991.1|  ribosomal large subunit pseudouridine synt...   106   7e-22 
ref|YP_045202.1|  23S rRNA pseudouridylate synthase [Acineto...   106   7e-22 
pdb|1PRZ|A  Chain A, Crystal Structure Of Pseudouridine Synt...   106   7e-22 
ref|NP_245929.1|  RluC [Pasteurella multocida subsp. multoci...   106   7e-22 
ref|ZP_01188108.1|  Pseudouridine synthase, RluD [Halothermo...   106   7e-22 
ref|YP_734532.1|  pseudouridine synthase, RluA family [Shewa...   106   7e-22 
ref|ZP_00731724.1|  Pseudouridylate synthase [Actinobacillus...   106   7e-22 
gb|EAK60991.1|  unknown [environmental sequence]                  106   1e-21 
gb|EAF13033.1|  unknown [environmental sequence]                  106   1e-21 
ref|ZP_01603529.1|  pseudouridine synthase, RluA family [She...   106   1e-21 
ref|ZP_01545717.1|  Prenyl group binding site (CAAX box):RNA...   106   1e-21 
ref|ZP_01451055.1|  possible pseudouridine synthase [Maripro...   106   1e-21 
ref|ZP_01412571.1|  Pseudouridylate synthase [Sinorhizobium ...   106   1e-21 
ref|YP_994898.1|  pseudouridine synthase, RluA family [Vermi...   106   1e-21 
ref|ZP_01253381.1|  ribosomal large subunit pseudouridine sy...   106   1e-21 
ref|YP_470831.1|  pseudouridylate synthase, ribosomal large ...   106   1e-21 
ref|YP_484076.1|  Pseudouridine synthase, RluD [Rhodopseudom...   106   1e-21 
ref|YP_318007.1|  pseudouridine synthase, RluD [Nitrobacter ...   106   1e-21 
ref|YP_151704.1|  ftsH suppressor protein SfhB [Salmonella e...   106   1e-21 
ref|YP_365073.1|  ribosomal large subunit pseudouridine synt...   106   1e-21 
pdb|1QYU|A  Chain A, Structure Of The Catalytic Domain Of 23...   106   1e-21 
ref|NP_626332.1|  ribosomal large subunit pseudouridine synt...   106   1e-21 
ref|ZP_01075304.1|  ribosomal large subunit pseudouridine sy...   106   1e-21 
ref|ZP_01038706.1|  pseudouridine synthase D large subunit [...   106   1e-21 
ref|ZP_00952041.1|  ribosomal large subunit pseudouridine sy...   106   1e-21 
ref|ZP_00133831.1|  COG0564: Pseudouridylate synthases, 23S ...   106   1e-21 
gb|EAK52698.1|  unknown [environmental sequence]                  105   1e-21 
gb|EAA86318.1|  unknown [environmental sequence]                  105   1e-21 
ref|YP_616788.1|  Pseudouridine synthase, RluD [Sphingopyxis...   105   1e-21 
ref|ZP_01307824.1|  Pseudouridylate synthases, 23S RNA-speci...   105   1e-21 
ref|YP_165778.1|  ribosomal large subunit pseudouridine synt...   105   1e-21 
ref|YP_323430.1|  Pseudouridine synthase, RluD [Anabaena var...   105   1e-21 
ref|YP_350564.1|  Pseudouridine synthase, RluD [Pseudomonas ...   105   1e-21 
ref|ZP_01062398.1|  ribosomal large subunit pseudouridine sy...   105   1e-21 
ref|ZP_01046084.1|  pseudouridine synthase, RluD [Nitrobacte...   105   1e-21 
ref|YP_828461.1|  pseudouridine synthase, RluA family [Solib...   105   1e-21 
ref|YP_604075.1|  Pseudouridine synthase, RluD [Deinococcus ...   105   1e-21 
ref|YP_818839.1|  Pseudouridylate synthase, 23S RNA-specific...   105   1e-21 
ref|YP_721578.1|  pseudouridine synthase, RluA family [Trich...   105   1e-21 
gb|EAI50106.1|  unknown [environmental sequence]                  105   2e-21 
gb|EAD44936.1|  unknown [environmental sequence]                  105   2e-21 
gb|EAG46974.1|  unknown [environmental sequence]                  105   2e-21 
ref|ZP_01432342.1|  Pseudouridine synthase, RluD [Salinispor...   105   2e-21 
ref|YP_681765.1|  ribosomal large subunit pseudouridine synt...   105   2e-21 
ref|ZP_01295996.1|  hypothetical protein PaerP_01002009 [Pse...   105   2e-21 
ref|YP_067770.1|  Pseudouridine synthase. [Rickettsia typhi ...   105   2e-21 
ref|NP_965041.1|  ribosomal large subunit pseudouridine synt...   105   2e-21 
ref|YP_117997.1|  putative RNA pseudouridine synthase [Nocar...   105   2e-21 
dbj|BAA09443.1|  ORFX [Zymomonas mobilis]                         105   2e-21 
ref|NP_389044.1|  hypothetical protein BSU11620 [Bacillus su...   105   2e-21 
ref|ZP_01150353.1|  Pseudouridine synthase, RluD [Desulfotom...   105   2e-21 
ref|ZP_01684454.1|  hypothetical protein MtubF_02001584 [Myc...   105   2e-21 
ref|YP_927863.1|  pseudouridylate synthase [Shewanella amazo...   105   2e-21 
ref|NP_216056.1|  CONSERVED HYPOTHETICAL PROTEIN MEMBER OF y...   105   2e-21 
gb|EAK69149.1|  unknown [environmental sequence]                  105   2e-21 
gb|EAK23435.1|  unknown [environmental sequence]                  105   2e-21 
gb|EAJ18245.1|  unknown [environmental sequence]                  105   2e-21 
gb|ABK79683.1|  ribosomal large subunit pseudouridine syntha...   105   2e-21 
ref|YP_855705.1|  RNA pseudouridine synthase family protein ...   105   2e-21 
ref|YP_155572.1|  Pseudouridylate synthase [Idiomarina loihi...   105   2e-21 
ref|NP_691770.1|  hypothetical protein OB0849 [Oceanobacillu...   105   2e-21 
ref|NP_082285.1|  RNA pseudouridylate synthase domain contai...   105   2e-21 
ref|NP_772006.1|  putative ribosomal large subunit pseudouri...   105   2e-21 
ref|YP_870801.1|  pseudouridine synthase, RluA family [Shewa...   105   2e-21 
ref|ZP_00155415.2|  COG0564: Pseudouridylate synthases, 23S ...   105   2e-21 
ref|YP_612286.1|  Pseudouridine synthase, RluD [Silicibacter...   105   2e-21 
ref|ZP_00540512.1|  Pseudouridine synthase, RluD [Exiguobact...   105   2e-21 
ref|YP_735121.1|  pseudouridine synthase, RluA family [Shewa...   105   2e-21 
ref|ZP_00509934.1|  Pseudouridine synthase, RluD [Clostridiu...   105   2e-21 
gb|EAJ33939.1|  unknown [environmental sequence]                  104   3e-21 
gb|EAI20718.1|  unknown [environmental sequence]                  104   3e-21 
gb|EAE30626.1|  unknown [environmental sequence]                  104   3e-21 
ref|YP_001007464.1|  hypothetical protein YE3290 [Yersinia e...   104   3e-21 
ref|ZP_01544359.1|  pseudouridylate synthases, 23S RNA-speci...   104   3e-21 
ref|NP_001070221.1|  hypothetical protein LOC767786 [Danio r...   104   3e-21 
ref|YP_203996.1|  tRNA pseudouridine synthase C [Vibrio fisc...   104   3e-21 
ref|YP_273876.1|  ribosomal large subunit pseudouridine synt...   104   3e-21 
ref|YP_154005.1|  sfhb-like protein [Anaplasma marginale str...   104   3e-21 
ref|YP_139045.1|  ribosomal large subunit pseudouridine synt...   104   3e-21 
ref|YP_383237.1|  Pseudouridine synthase [Geobacter metallir...   104   3e-21 
ref|YP_146999.1|  hypothetical protein GK1146 [Geobacillus k...   104   3e-21 
ref|YP_049890.1|  ribosomal large subunit pseudouridine synt...   104   3e-21 
ref|XP_448289.1|  unnamed protein product [Candida glabrata]...   104   3e-21 
ref|YP_032415.1|  Ribosomal large subunit pseudouridine synt...   104   3e-21 
sp|O50310|YBC5_CHLVI  Hypothetical RNA pseudouridine synthas...   104   3e-21 
ref|NP_643525.1|  ribosomal large subunit pseudouridine synt...   104   3e-21 
ref|NP_109980.1|  similar to RIBOSOMAL LARGE SUBUNIT PSEUDOU...   104   3e-21 
ref|ZP_01016036.1|  Ribosomal large subunit pseudouridine sy...   104   3e-21 
ref|YP_870199.1|  pseudouridine synthase, RluA family [Shewa...   104   3e-21 
ref|ZP_00156249.2|  COG0564: Pseudouridylate synthases, 23S ...   104   3e-21 
ref|YP_804440.1|  Pseudouridylate synthase, 23S RNA-specific...   104   3e-21 
ref|YP_810646.1|  Pseudouridylate synthase, 23S RNA-specific...   104   3e-21 
gb|EAJ43270.1|  unknown [environmental sequence]                  104   4e-21 
gb|EAC15705.1|  unknown [environmental sequence]                  104   4e-21 
ref|YP_862705.1|  ribosomal large subunit pseudouridine synt...   104   4e-21 
ref|YP_769344.1|  putative ribosomal large subunit pseudouri...   104   4e-21 
ref|ZP_01306132.1|  ribosomal large subunit pseudouridine sy...   104   4e-21 
ref|ZP_01264223.1|  pseudouridylate synthase [Candidatus Pel...   104   4e-21 
ref|YP_537426.1|  Ribosomal large subunit pseudouridine synt...   104   4e-21 
ref|YP_536344.1|  Ribosomal large subunit pseudouridine synt...   104   4e-21 
gb|AAN87504.1|  Ribosomal large subunit pseudouridine syntha...   104   4e-21 
ref|YP_266031.1|  pseudouridylate synthase [Candidatus Pelag...   104   4e-21 
ref|NP_812623.1|  ribosomal large subunit pseudouridine synt...   104   4e-21 
ref|YP_075072.1|  23S rRNA pseudouridine synthase [Symbiobac...   104   4e-21 
ref|NP_562766.1|  hypothetical protein CPE1850 [Clostridium ...   104   4e-21 
ref|ZP_00998099.1|  ribosomal large subunit pseudouridine sy...   104   4e-21 
ref|YP_820025.1|  Pseudouridylate synthase, 23S RNA-specific...   104   4e-21 
gb|EAI29209.1|  unknown [environmental sequence]                  103   5e-21 
ref|YP_892378.1|  ribosomal pseudouridine synthase [Campylob...   103   5e-21 
ref|YP_699133.1|  pseudouridine synthase [Clostridium perfri...   103   5e-21 
ref|ZP_01300446.1|  hypothetical protein Rgryl_01001075 [Ric...   103   5e-21 
ref|ZP_01300464.1|  hypothetical protein Rgryl_01001093 [Ric...   103   5e-21 
ref|YP_454263.1|  ribosomal large subunit pseudouridine synt...   103   5e-21 
ref|ZP_01075845.1|  pseudouridine synthase Rlu family protei...   103   5e-21 
ref|YP_570256.1|  Pseudouridine synthase, RluD [Rhodopseudom...   103   5e-21 
ref|YP_753966.1|  Pseudouridylate synthase [Syntrophomonas w...   103   5e-21 
ref|ZP_00108262.1|  COG0564: Pseudouridylate synthases, 23S ...   103   5e-21 
ref|NP_404651.1|  hypothetical protein YPO1038 [Yersinia pes...   103   5e-21 
gb|EAK28582.1|  unknown [environmental sequence]                  103   6e-21 
gb|EAK06336.1|  unknown [environmental sequence]                  103   6e-21 
gb|EAI51926.1|  unknown [environmental sequence]                  103   6e-21 
gb|EAI18112.1|  unknown [environmental sequence]                  103   6e-21 
ref|YP_001018795.1|  putative pseudouridylate synthase speci...   103   6e-21 
ref|YP_932522.1|  pseudouridylate synthase [Azoarcus sp. BH7...   103   6e-21 
ref|ZP_01519620.1|  pseudouridine synthase, RluA family [Com...   103   6e-21 
ref|YP_779753.1|  pseudouridine synthase, RluA family [Rhodo...   103   6e-21 
ref|YP_690063.1|  hypothetical protein SFV_2666 [Shigella fl...   103   6e-21 
ref|ZP_01355275.1|  Pseudouridine synthase, RluD [Clostridiu...   103   6e-21 
ref|YP_542144.1|  hypothetical protein UTI89_C3161 [Escheric...   103   6e-21 
ref|YP_404519.1|  hypothetical protein SDY_3008 [Shigella dy...   103   6e-21 
ref|NP_348732.1|  Predicted pseudouridylate synthase, YLYB B...   103   6e-21 
ref|NP_347897.1|  Pseudouridylate synthase family protein, y...   103   6e-21 
ref|NP_782220.1|  ribosomal large subunit pseudouridine synt...   103   6e-21 
ref|YP_051436.1|  ribosomal large subunit pseudouridine synt...   103   6e-21 
ref|NP_928010.1|  hypothetical protein plu0665 [Photorhabdus...   103   6e-21 
ref|NP_289346.1|  hypothetical protein Z4107 [Escherichia co...   103   6e-21 
ref|ZP_01150166.1|  Pseudouridine synthase, RluD [Desulfotom...   103   6e-21 
ref|ZP_00700786.1|  COG0564: Pseudouridylate synthases, 23S ...   103   6e-21 
ref|ZP_00833195.1|  COG0564: Pseudouridylate synthases, 23S ...   103   6e-21 
ref|ZP_00365521.1|  COG0564: Pseudouridylate synthases, 23S ...   103   6e-21 
ref|NP_417271.1|  tRNA pseudouridine synthase [Escherichia c...   103   6e-21 
gb|EAJ16787.1|  unknown [environmental sequence]                  103   8e-21 
gb|EAB53189.1|  unknown [environmental sequence]                  103   8e-21 
gb|EAE83960.1|  unknown [environmental sequence]                  103   8e-21 
gb|EAD99853.1|  unknown [environmental sequence]                  103   8e-21 
ref|ZP_01589771.1|  pseudouridine synthase [Enterobacter sp....   103   8e-21 
ref|ZP_01459900.1|  ribosomal large subunit pseudouridine sy...   103   8e-21 
ref|XP_213253.3|  PREDICTED: similar to RNA pseudouridylate ...   103   8e-21 
ref|YP_618998.1|  Pseudouridylate synthase [Lactobacillus de...   103   8e-21 
ref|YP_576856.1|  Pseudouridine synthase, RluD [Nitrobacter ...   103   8e-21 
gb|AAX77894.1|  unknown protein [synthetic construct]             103   8e-21 
ref|YP_436856.1|  Pseudouridylate synthases, 23S RNA-specifi...   103   8e-21 
ref|YP_258908.1|  ribosomal large subunit pseudouridine synt...   103   8e-21 
ref|YP_247039.1|  Ribosomal large subunit pseudouridine synt...   103   8e-21 
ref|YP_170203.1|  ribosomal large subunit pseudouridine synt...   103   8e-21 
ref|YP_007354.1|  probable 23S RNA-specific pseudouridine sy...   103   8e-21 
ref|ZP_01170579.1|  ribosomal large subunit pseudouridine sy...   103   8e-21 
ref|ZP_01134240.1|  23S rRNA pseudouridylate synthase [Pseud...   103   8e-21 
ref|ZP_01117913.1|  ribosomal large subunit pseudouridine sy...   103   8e-21 
ref|ZP_00994847.1|  putative ribosomal large subunit pseudou...   103   8e-21 
gb|EAK46862.1|  unknown [environmental sequence]                  102   1e-20 
gb|EAI46016.1|  unknown [environmental sequence]                  102   1e-20 
gb|EAC04543.1|  unknown [environmental sequence]                  102   1e-20 
gb|EAF26293.1|  unknown [environmental sequence]                  102   1e-20 
ref|YP_001010538.1|  putative pseudouridylate synthase speci...   102   1e-20 
ref|YP_898899.1|  ribosomal large subunit pseudouridine synt...   102   1e-20 
ref|YP_806941.1|  Pseudouridylate synthase, 23S RNA-specific...   102   1e-20 
ref|YP_234725.1|  Pseudouridine synthase, RluD [Pseudomonas ...   102   1e-20 
ref|NP_359981.1|  ribosomal large subunit pseudouridine synt...   102   1e-20 
ref|ZP_01124465.1|  putative pseudouridylate synthase [Synec...   102   1e-20 
ref|ZP_01054183.1|  ribosomal large subunit pseudouridine sy...   102   1e-20 
ref|YP_750180.1|  pseudouridine synthase, RluA family protei...   102   1e-20 
ref|ZP_00531540.1|  Pseudouridine synthase, RluD [Chlorobium...   102   1e-20 
gb|EAK31481.1|  unknown [environmental sequence]                  102   1e-20 
gb|EAK25705.1|  unknown [environmental sequence]                  102   1e-20 
gb|EAI02880.1|  unknown [environmental sequence]                  102   1e-20 
gb|EAG19053.1|  unknown [environmental sequence]                  102   1e-20 
gb|EAC08985.1|  unknown [environmental sequence]                  102   1e-20 
gb|EAC08020.1|  unknown [environmental sequence]                  102   1e-20 
gb|EAE02693.1|  unknown [environmental sequence]                  102   1e-20 
gb|EAY44823.1|  pseudouridine synthase, RluA family [Bacillu...   102   1e-20 
ref|ZP_01671520.1|  pseudouridine synthase, RluA family [Ana...   102   1e-20 
ref|ZP_01500604.1|  pseudouridine synthase, RluA family [Bur...   102   1e-20 
ref|YP_846046.1|  pseudouridine synthase [Syntrophobacter fu...   102   1e-20 
ref|ZP_01462492.1|  ribosomal large subunit pseudouridine sy...   102   1e-20 
ref|ZP_01274909.1|  Pseudouridine synthase, RluD [Lactobacil...   102   1e-20 
ref|YP_513450.1|  ribosomal large subunit pseudouridine synt...   102   1e-20 
ref|NP_873039.1|  pseudouridine synthase [Haemophilus ducrey...   102   1e-20 
ref|NP_692407.1|  hypothetical protein OB1486 [Oceanobacillu...   102   1e-20 
ref|ZP_01198341.1|  similar to Pseudouridylate synthases 23S...   102   1e-20 
ref|ZP_00951437.1|  ribosomal large subunit pseudouridine sy...   102   1e-20 
ref|ZP_00814855.1|  Pseudouridine synthase, RluD [Shewanella...   102   1e-20 
ref|YP_567498.1|  Pseudouridine synthase, RluD [Rhodopseudom...   102   1e-20 
ref|ZP_00512892.1|  Pseudouridine synthase, RluD [Chlorobium...   102   1e-20 
gb|EAI84203.1|  unknown [environmental sequence]                  102   2e-20 
gb|EAH87958.1|  unknown [environmental sequence]                  102   2e-20 
gb|EAE82770.1|  unknown [environmental sequence]                  102   2e-20 
ref|YP_795006.1|  Pseudouridylate synthase, 23S RNA-specific...   102   2e-20 
emb|CAL53702.1|  ribosomal large subunit pseudouridine syn (...   102   2e-20 
gb|EAT99798.1|  hypothetical RNA pseudouridine synthase [Cam...   102   2e-20 
ref|ZP_01375715.1|  hypothetical protein Ccur5_01001580 [Cam...   102   2e-20 
gb|AAP49462.1|  YlyB [Streptococcus suis]                         102   2e-20 
ref|YP_262374.1|  ribosomal large subunit pseudouridine synt...   102   2e-20 
ref|YP_248126.1|  ribosomal large subunit pseudouridine synt...   102   2e-20 
ref|YP_247357.1|  Ribosomal large subunit pseudouridine synt...   102   2e-20 
ref|YP_140934.1|  ribosomal large subunit pseudouridine synt...   102   2e-20 
ref|NP_954201.1|  RNA pseudouridine synthase family protein ...   102   2e-20 
ref|YP_175835.1|  pseudouridine synthase [Bacillus clausii K...   102   2e-20 
ref|NP_870762.1|  ribosomal large subunit pseudouridine synt...   102   2e-20 
ref|NP_221194.1|  SFHB PROTEIN HOMOLOG (sfhB) [Rickettsia pr...   102   2e-20 
ref|YP_989029.1|  pseudouridine synthase, RluA family [Barto...   102   2e-20 
ref|ZP_01132456.1|  tRNA pseudouridine synthase C [Pseudoalt...   102   2e-20 
ref|ZP_00732827.1|  Pseudouridylate synthase [Actinobacillus...   102   2e-20 
ref|ZP_00661895.1|  Pseudouridine synthase, RluD [Prosthecoc...   102   2e-20 
ref|NP_072871.1|  pseudouridine synthase, RluA family [Mycop...   102   2e-20 
gb|EAK44659.1|  unknown [environmental sequence]                  101   2e-20 
gb|EAI98658.1|  unknown [environmental sequence]                  101   2e-20 
gb|EAI60332.1|  unknown [environmental sequence]                  101   2e-20 
gb|EAD40696.1|  unknown [environmental sequence]                  101   2e-20 
gb|EAC19787.1|  unknown [environmental sequence]                  101   2e-20 
ref|ZP_01627653.1|  pseudouridine synthase [marine gamma pro...   101   2e-20 
ref|ZP_01617091.1|  tRNA pseudouridine synthase C [marine ga...   101   2e-20 
ref|ZP_01542460.1|  pseudouridine synthase, RluA family [She...   101   2e-20 
ref|YP_756993.1|  pseudouridine synthase, RluA family [Maric...   101   2e-20 
ref|ZP_01274306.1|  Pseudouridine synthase, RluD [Lactobacil...   101   2e-20 
ref|YP_358355.1|  suppressor of ftsH mutation [Pelobacter ca...   101   2e-20 
ref|YP_445861.1|  ribosomal large subunit pseudouridine synt...   101   2e-20 
ref|YP_088816.1|  RluA protein [Mannheimia succiniciproducen...   101   2e-20 
ref|YP_146684.1|  hypothetical protein GK0831 [Geobacillus k...   101   2e-20 
ref|NP_948547.1|  possible ribosomal large subunit pseudouri...   101   2e-20 
ref|NP_240218.1|  ribosomal large subunit pseudouridine synt...   101   2e-20 
ref|ZP_01054379.1|  ribosomal large subunit pseudouridine sy...   101   2e-20 
ref|ZP_00826994.1|  COG0564: Pseudouridylate synthases, 23S ...   101   2e-20 
ref|ZP_00821731.1|  COG0564: Pseudouridylate synthases, 23S ...   101   2e-20 
ref|ZP_00725638.1|  COG0564: Pseudouridylate synthases, 23S ...   101   2e-20 
ref|YP_749365.1|  pseudouridine synthase, RluA family protei...   101   2e-20 
gb|EAD87809.1|  unknown [environmental sequence]                  101   3e-20 
ref|YP_538416.1|  Ribosomal large subunit pseudouridine synt...   101   3e-20 
ref|YP_536369.1|  Ribosomal large subunit pseudouridine synt...   101   3e-20 
ref|YP_504969.1|  ribosomal large subunit pseudouridine synt...   101   3e-20 
ref|YP_409037.1|  hypothetical protein SBO_2672 [Shigella bo...   101   3e-20 
ref|XP_547206.2|  PREDICTED: similar to RNA pseudouridylate ...   101   3e-20 
ref|NP_984770.1|  AEL091Cp [Ashbya gossypii ATCC 10895] >gi|...   101   3e-20 
ref|YP_097772.1|  ribosomal large subunit pseudouridine synt...   101   3e-20 
ref|NP_892314.1|  putative pseudouridylate synthase specific...   101   3e-20 
ref|YP_982096.1|  pseudouridine synthase, RluA family [Polar...   101   3e-20 
ref|YP_530499.1|  Pseudouridine synthase, RluD [Rhodopseudom...   101   3e-20 
ref|ZP_00584260.1|  Pseudouridine synthase, RluD [Shewanella...   101   3e-20 
gb|EAJ49975.1|  unknown [environmental sequence]                  100   4e-20 
gb|EAD91969.1|  unknown [environmental sequence]                  100   4e-20 
ref|YP_001021196.1|  putative ribosomal large subunit pseudo...   100   4e-20 
ref|ZP_01618232.1|  ribosomal large subunit pseudouridine sy...   100   4e-20 
ref|ZP_01437036.1|  Pseudouridine synthase, RluD [Shewanella...   100   4e-20 
ref|YP_969782.1|  pseudouridine synthase, RluA family [Acido...   100   4e-20 
ref|YP_563865.1|  Pseudouridine synthase, RluD [Shewanella d...   100   4e-20 
ref|YP_200236.1|  ribosomal large subunit pseudouridine synt...   100   4e-20 
ref|YP_095362.1|  ribosomal large subunit pseudouridine synt...   100   4e-20 
ref|YP_424375.1|  ribosomal large subunit pseudouridine synt...   100   4e-20 
ref|YP_450510.1|  ribosomal large subunit pseudouridine synt...   100   4e-20 
ref|NP_975564.1|  ribosomal large subunit pseudouridylate sy...   100   4e-20 
ref|NP_935354.1|  pseudouridylate synthase, 23S RNA-specific...   100   4e-20 
ref|NP_692143.1|  pseudouridine synthase [Oceanobacillus ihe...   100   4e-20 
ref|ZP_01179338.1|  Pseudouridine synthase, RluD [Bacillus c...   100   4e-20 
ref|ZP_00899552.1|  Pseudouridine synthase, RluD [Pseudomona...   100   4e-20 
ref|ZP_00838722.1|  Pseudouridine synthase, RluD [Shewanella...   100   4e-20 
ref|YP_924241.1|  pseudouridine synthase, RluA family [Nocar...   100   4e-20 
ref|ZP_01540294.1|  pseudouridine synthase, RluA family [She...   100   5e-20 
gb|AAA23442.1|  orfX                                              100   5e-20 
ref|NP_360947.1|  sfhB protein homolog [Rickettsia conorii s...   100   5e-20 
ref|YP_190939.1|  Ribosomal large subunit pseudouridine synt...   100   5e-20 
ref|YP_090856.1|  YjbO [Bacillus licheniformis ATCC 14580] >...   100   5e-20 
ref|YP_078456.1|  Pseudouridine synthase YjbO [Bacillus lich...   100   5e-20 
ref|NP_104781.1|  pseudouridine synthase [Mesorhizobium loti...   100   5e-20 
ref|ZP_00589477.1|  Pseudouridine synthase, RluD [Pelodictyo...   100   5e-20 
ref|ZP_00153390.1|  COG0564: Pseudouridylate synthases, 23S ...   100   5e-20 
gb|EAJ87726.1|  unknown [environmental sequence]                  100   7e-20 
gb|EAI21067.1|  unknown [environmental sequence]                  100   7e-20 
gb|EAH93562.1|  unknown [environmental sequence]                  100   7e-20 
gb|EAG76097.1|  unknown [environmental sequence]                  100   7e-20 
gb|EAG20812.1|  unknown [environmental sequence]                  100   7e-20 
ref|ZP_01693772.1|  ribosomal large subunit pseudouridine sy...   100   7e-20 
ref|YP_986741.1|  pseudouridine synthase [Acidovorax sp. JS4...   100   7e-20 
ref|ZP_01577021.1|  pseudouridine synthase, RluA family [Clo...   100   7e-20 
ref|ZP_01252068.1|  hypothetical protein P700755_12402 [Psyc...   100   7e-20 
ref|ZP_01203175.1|  ribosomal large subunit pseudouridine sy...   100   7e-20 
ref|YP_528023.1|  Glycosyl transferase, family 19 [Saccharop...   100   7e-20 
ref|YP_385781.1|  Pseudouridine synthase, RluD [Geobacter me...   100   7e-20 
ref|NP_755234.1|  Hypothetical protein yqcB [Escherichia col...   100   7e-20 
ref|NP_471291.1|  hypothetical protein lin1957 [Listeria inn...   100   7e-20 
ref|NP_773976.1|  pseudouridine synthase homolog [Bradyrhizo...   100   7e-20 
ref|ZP_00801125.1|  Pseudouridine synthase, RluD [Alkaliphil...   100   7e-20 
gb|EAE30718.1|  unknown [environmental sequence]                  100   9e-20 
ref|YP_001014098.1|  putative pseudouridylate synthase speci...   100   9e-20 
ref|ZP_01666635.1|  pseudouridine synthase, RluA family [The...   100   9e-20 
ref|YP_631549.1|  pseudouridine synthase, RluA family [Myxoc...   100   9e-20 
ref|ZP_01348046.1|  hypothetical protein RcanM_01001035 [Ric...   100   9e-20 
ref|ZP_01225100.1|  Pseudouridine synthase, RluD [marine gam...   100   9e-20 
ref|YP_078939.1|  Pseudouridine synthase [Bacillus lichenifo...   100   9e-20 
ref|NP_102152.1|  ribosomal large subunit pseudouridine synt...   100   9e-20 
ref|ZP_01052560.1|  hypothetical protein MED152_04700 [Tenac...   100   9e-20 
ref|ZP_00142579.1|  sfhB protein homolog [Rickettsia sibiric...   100   9e-20 
gb|EAJ01131.1|  unknown [environmental sequence]                   99   1e-19 
gb|EAI67609.1|  unknown [environmental sequence]                   99   1e-19 
emb|CAK98921.1|  probable pseudouridine synthase d protein [...    99   1e-19 
ref|YP_633659.1|  pseudouridine synthase, RluA family [Myxoc...    99   1e-19 
ref|YP_067212.1|  Pseudouridine synthase. [Rickettsia typhi ...    99   1e-19 
ref|YP_445314.1|  ribosomal large subunit pseudouridine synt...    99   1e-19 
ref|YP_217891.1|  putative synthase [Salmonella enterica sub...    99   1e-19 
ref|YP_180184.1|  putative ribosomal large subunit pseudouri...    99   1e-19 
ref|NP_864762.1|  ribosomal large subunit pseudouridine synt...    99   1e-19 
ref|NP_214204.1|  hypothetical protein aq_1758 [Aquifex aeol...    99   1e-19 
ref|NP_461885.1|  putative pseudouridylate synthase [Salmone...    99   1e-19 
ref|ZP_01163888.1|  Pseudouridine synthase, RluD [Lactobacil...    99   1e-19 
ref|YP_001001850.1|  pseudouridine synthase [Halorhodospira ...    99   1e-19 
ref|ZP_00985886.1|  COG0564: Pseudouridylate synthases, 23S ...    99   1e-19 
ref|ZP_00828262.1|  COG0564: Pseudouridylate synthases, 23S ...    99   1e-19 
ref|ZP_00539601.1|  Pseudouridine synthase, RluD [Exiguobact...    99   1e-19 
ref|NP_465368.1|  hypothetical protein lmo1843 [Listeria mon...    99   1e-19 
gb|EAK45617.1|  unknown [environmental sequence]                   99   2e-19 
gb|EAJ25649.1|  unknown [environmental sequence]                   99   2e-19 
gb|EAI38178.1|  unknown [environmental sequence]                   99   2e-19 
gb|EAH41424.1|  unknown [environmental sequence]                   99   2e-19 
gb|EAE11938.1|  unknown [environmental sequence]                   99   2e-19 
ref|ZP_01640106.1|  Pseudouridine synthase, RluD [Pseudomona...    99   2e-19 
ref|YP_850059.1|  Ribosomal large subunit pseudouridine synt...    99   2e-19 
ref|ZP_01226901.1|  ribosomal large subunit pseudouridine sy...    99   2e-19 
ref|YP_390974.1|  Pseudouridine synthase, RluD [Thiomicrospi...    99   2e-19 
ref|YP_151989.1|  putative RNA pseudouridylate synthase [Sal...    99   2e-19 
ref|NP_965486.1|  hypothetical protein LJ1679 [Lactobacillus...    99   2e-19 
ref|NP_419272.1|  ribosomal large subunit pseudouridine synt...    99   2e-19 
ref|YP_454733.1|  ribosomal large subunit pseudouridine synt...    99   2e-19 
ref|YP_196248.1|  Ribosomal large subunit pseudouridine synt...    99   2e-19 
ref|NP_438574.1|  hypothetical protein HI0412 [Haemophilus i...    99   2e-19 
ref|NP_760731.1|  Pseudouridylate synthase [Vibrio vulnificu...    99   2e-19 
ref|NP_457360.1|  putative RNA pseudouridylate synthase [Sal...    99   2e-19 
ref|NP_220643.1|  hypothetical protein RP258 [Rickettsia pro...    99   2e-19 
ref|NP_682328.1|  ribosomal large subunit pseudouridine synt...    99   2e-19 
ref|NP_798701.1|  pseudouridine synthase Rlu family protein ...    99   2e-19 
ref|ZP_01171009.1|  ribosomal large subunit pseudouridine sy...    99   2e-19 
ref|ZP_01065213.1|  pseudouridine synthase Rlu family protei...    99   2e-19 
ref|ZP_00921909.1|  COG0564: Pseudouridylate synthases, 23S ...    99   2e-19 
ref|YP_734778.1|  Pseudouridylate synthase [Shewanella sp. M...    99   2e-19 
ref|YP_738759.1|  Pseudouridylate synthase [Shewanella sp. M...    99   2e-19 
ref|ZP_00154252.1|  COG0564: Pseudouridylate synthases, 23S ...    99   2e-19 
gb|EAG59902.1|  unknown [environmental sequence]                   99   2e-19 
gb|EAC40412.1|  unknown [environmental sequence]                   99   2e-19 
gb|EAC17021.1|  unknown [environmental sequence]                   99   2e-19 
gb|EAE18205.1|  unknown [environmental sequence]                   99   2e-19 
emb|CAL98959.1|  ribosomal large subunit pseudouridine synth...    99   2e-19 
ref|ZP_01552323.1|  pseudouridine synthase D [Methylophilale...    99   2e-19 
ref|YP_588880.1|  ribosomal large subunit pseudouridine synt...    99   2e-19 
ref|YP_378142.1|  Pseudouridine synthase, RluD [Synechococcu...    99   2e-19 
ref|NP_898415.1|  putative pseudouridylate synthase specific...    99   2e-19 
ref|NP_519162.1|  PROBABLE RIBOSOMAL LARGE SUBUNIT PSEUDOURI...    99   2e-19 
ref|ZP_01045554.1|  pseudouridine synthase, RluD [Nitrobacte...    99   2e-19 
ref|ZP_00340054.1|  COG0564: Pseudouridylate synthases, 23S ...    99   2e-19 
ref|ZP_00157274.2|  COG0564: Pseudouridylate synthases, 23S ...    99   2e-19 
gb|EAI75068.1|  unknown [environmental sequence]                   98   3e-19 
gb|EAF87337.1|  unknown [environmental sequence]                   98   3e-19 
gb|EAB42473.1|  unknown [environmental sequence]                   98   3e-19 
ref|ZP_01691710.1|  ribosomal large subunit pseudouridine sy...    98   3e-19 
ref|ZP_01544565.1|  pseudouridine synthase [Oenococcus oeni ...    98   3e-19 
ref|ZP_01440299.1|  Prenyl group binding site (CAAX box):RNA...    98   3e-19 
ref|YP_630767.1|  pseudouridine synthase, RluA family [Myxoc...    98   3e-19 
ref|YP_607274.1|  23S rRNA pseudouridylate synthase [Pseudom...    98   3e-19 
ref|ZP_01258734.1|  pseudouridine synthase Rlu family protei...    98   3e-19 
ref|YP_296481.1|  Pseudouridine synthase, RluD [Ralstonia eu...    98   3e-19 
ref|YP_249146.1|  tRNA pseudouridine synthase C [Haemophilus...    98   3e-19 
ref|NP_295407.1|  pseudouridine synthase, putative [Deinococ...    98   3e-19 
ref|ZP_00993135.1|  pseudouridine synthase Rlu family protei...    98   3e-19 
ref|ZP_01473477.1|  hypothetical protein VEx2w_02003960 [Vib...    98   3e-19 
ref|YP_865691.1|  pseudouridine synthase, RluA family [Magne...    98   3e-19 
gb|EAF86655.1|  unknown [environmental sequence]                   98   3e-19 
gb|EAB68009.1|  unknown [environmental sequence]                   98   3e-19 
ref|ZP_01596134.1|  pseudouridine synthase, RluA family [Mar...    98   3e-19 
ref|YP_878581.1|  ribosomal large subunit pseudouridine synt...    98   3e-19 
ref|ZP_01469269.1|  Pseudouridine synthase, RluD [Synechococ...    98   3e-19 
ref|YP_757636.1|  pseudouridine synthase, RluA family [Maric...    98   3e-19 
ref|ZP_01361873.1|  Pseudouridine synthase, RluD [Clostridiu...    98   3e-19 
ref|ZP_01304091.1|  Pseudouridine synthase, RluD [Sphingomon...    98   3e-19 
ref|ZP_01236768.1|  putative pseudouridine synthase Rlu fami...    98   3e-19 
ref|YP_292751.1|  pseudouridine synthase, RluD [Prochlorococ...    98   3e-19 
ref|NP_268269.1|  pseudouridine synthase [Lactococcus lactis...    98   3e-19 
ref|YP_395927.1|  Pseudouridylate synthase, 23S rRNA-specifi...    98   3e-19 
ref|YP_123611.1|  Ribosomal large subunit pseudouridine synt...    98   3e-19 
ref|NP_784676.1|  pseudouridylate synthase [Lactobacillus pl...    98   3e-19 
ref|NP_388802.1|  hypothetical protein BSU09210 [Bacillus su...    98   3e-19 
ref|ZP_01161841.1|  putative pseudouridine synthase Rlu fami...    98   3e-19 
ref|ZP_01083652.1|  Pseudouridine synthase, RluD [Synechococ...    98   3e-19 
ref|ZP_00884402.1|  Pseudouridine synthase, RluD [Caldicellu...    98   3e-19 
ref|YP_870457.1|  pseudouridine synthase [Shewanella sp. ANA...    98   3e-19 
ref|YP_001019854.1|  putative ribosomal large subunit pseudo...    98   3e-19 
ref|XP_714726.1|  DRAP deaminase [Candida albicans SC5314] >...    98   3e-19 
gb|EAJ57574.1|  unknown [environmental sequence]                   97   5e-19 
gb|EAJ45929.1|  unknown [environmental sequence]                   97   5e-19 
gb|EAI51891.1|  unknown [environmental sequence]                   97   5e-19 
gb|EAI26309.1|  unknown [environmental sequence]                   97   5e-19 
ref|ZP_01434714.1|  Pseudouridylate synthase [Shewanella bal...    97   5e-19 
ref|ZP_01314715.1|  hypothetical protein Wendoof_01000461 [W...    97   5e-19 
ref|ZP_01271193.1|  Pseudouridylate synthase [Psychrobacter ...    97   5e-19 
ref|YP_393297.1|  Pseudouridine synthase, RluD [Thiomicrospi...    97   5e-19 
ref|YP_315321.1|  pseudouridine synthase, RluD [Thiobacillus...    97   5e-19 
ref|YP_498315.1|  Pseudouridine synthase, RluD [Novosphingob...    97   5e-19 
ref|YP_277698.1|  pseudouridine synthase [Candidatus Blochma...    97   5e-19 
ref|YP_194021.1|  pseudouridine synthase [Lactobacillus acid...    97   5e-19 
ref|YP_416543.1|  hypothetical protein SAB1061 [Staphylococc...    97   5e-19 
ref|NP_243713.1|  hypothetical protein BH2847 [Bacillus halo...    97   5e-19 
ref|ZP_01116334.1|  pseudouridine synthase [Reinekea sp. MED...    97   5e-19 
ref|ZP_00885729.1|  Pseudouridine synthase, RluD [Caldicellu...    97   5e-19 
ref|ZP_00582081.1|  Pseudouridylate synthase [Shewanella bal...    97   5e-19 
gb|EAJ46854.1|  unknown [environmental sequence]                   97   6e-19 
gb|EAI02009.1|  unknown [environmental sequence]                   97   6e-19 
gb|EAC38784.1|  unknown [environmental sequence]                   97   6e-19 
gb|EAF10858.1|  unknown [environmental sequence]                   97   6e-19 
ref|ZP_01606074.1|  pseudouridine synthase [Sphingomonas wit...    97   6e-19 
ref|ZP_01462239.1|  ribosomal large subunit pseudouridine sy...    97   6e-19 
ref|ZP_01386166.1|  Pseudouridine synthase, RluD [Chlorobium...    97   6e-19 
ref|ZP_01347385.1|  hypothetical protein RcanM_01000291 [Ric...    97   6e-19 
ref|ZP_01256094.1|  pseudouridylate synthase [Psychroflexus ...    97   6e-19 
ref|YP_522981.1|  Pseudouridine synthase, RluD [Rhodoferax f...    97   6e-19 
ref|YP_506045.1|  ribosomal large subunit pseudouridine synt...    97   6e-19 
ref|YP_113451.1|  ribosomal large subunit pseudouridine synt...    97   6e-19 
ref|NP_966878.1|  ribosomal large subunit pseudouridine synt...    97   6e-19 
ref|YP_171147.1|  ribosomal large subunit pseudouridine synt...    97   6e-19 
ref|NP_841497.1|  rluC; ribosomal large subunit pseudouridin...    97   6e-19 
ref|NP_478072.1|  RNA pseudouridylate synthase domain contai...    97   6e-19 
ref|ZP_00945486.1|  Ribosomal large subunit pseudouridine sy...    97   6e-19 
ref|YP_831074.1|  pseudouridine synthase, RluA family [Arthr...    97   6e-19 
gb|EAI05426.1|  unknown [environmental sequence]                   97   8e-19 
gb|EAF31740.1|  unknown [environmental sequence]                   97   8e-19 
gb|EAE08284.1|  unknown [environmental sequence]                   97   8e-19 
ref|ZP_01514681.1|  pseudouridine synthase [Chloroflexus agg...    97   8e-19 
ref|ZP_01471300.1|  Pseudouridine synthase, RluD [Synechococ...    97   8e-19 
ref|NP_001069342.1|  hypothetical protein LOC525521 [Bos tau...    97   8e-19 
ref|ZP_01288209.1|  Pseudouridine synthase, RluD [delta prot...    97   8e-19 
ref|NP_782616.1|  ribosomal large subunit pseudouridine synt...    97   8e-19 
ref|ZP_01182108.1|  Pseudouridine synthase, RluD [Bacillus c...    97   8e-19 
ref|ZP_01171609.1|  ribosomal large subunit pseudouridine sy...    97   8e-19 
ref|ZP_00909059.1|  Pseudouridine synthase, RluD [Clostridiu...    97   8e-19 
gb|EAK61197.1|  unknown [environmental sequence]                   96   1e-18 
gb|EAH45661.1|  unknown [environmental sequence]                   96   1e-18 
gb|EAC90717.1|  unknown [environmental sequence]                   96   1e-18 
gb|EAE59542.1|  unknown [environmental sequence]                   96   1e-18 
ref|YP_807050.1|  Pseudouridylate synthase, 23S RNA-specific...    96   1e-18 
emb|CAJ67901.1|  putative pseudouridylate synthase [Clostrid...    96   1e-18 
ref|ZP_01422936.1|  Pseudouridine synthase, RluD [Caulobacte...    96   1e-18 
ref|YP_634049.1|  pseudouridine synthase, RluA family [Myxoc...    96   1e-18 
ref|ZP_01635787.1|  hypothetical protein CdifQ_03001173 [Clo...    96   1e-18 
ref|YP_357289.1|  pseudouridylate synthase, 23S RNA-specific...    96   1e-18 
ref|YP_459278.1|  pseudouridylate synthase [Erythrobacter li...    96   1e-18 
ref|NP_722253.1|  putative pseudouridylate synthase [Strepto...    96   1e-18 
ref|YP_162240.1|  pseudouridylate synthase [Zymomonas mobili...    96   1e-18 
ref|YP_001002818.1|  pseudouridine synthase, RluA family [Ha...    96   1e-18 
ref|YP_014464.1|  ribosomal large subunit pseudouridine synt...    96   1e-18 
ref|ZP_00416277.1|  Pseudouridine synthase, RluD [Azotobacte...    96   1e-18 
gb|EAK59152.1|  unknown [environmental sequence]                   96   1e-18 
gb|EAJ22963.1|  unknown [environmental sequence]                   96   1e-18 
gb|EAH32990.1|  unknown [environmental sequence]                   96   1e-18 
ref|YP_959144.1|  pseudouridine synthase, RluA family [Marin...    96   1e-18 
ref|ZP_01494090.1|  Pseudouridine synthase, RluD [Polynucleo...    96   1e-18 
ref|YP_795599.1|  Pseudouridylate synthase, 23S RNA-specific...    96   1e-18 
ref|YP_633384.1|  pseudouridine synthase, RluA family [Myxoc...    96   1e-18 
ref|ZP_01366442.1|  hypothetical protein PaerPA_01003588 [Ps...    96   1e-18 
ref|YP_943547.1|  pseudouridine synthase, RluA family protei...    96   1e-18 
gb|AAT51141.1|  PA2975 [synthetic construct]                       96   1e-18 
ref|YP_507572.1|  ribosomal large subunit pseudouridine synt...    96   1e-18 
ref|NP_809555.1|  RNA pseudouridylate synthase [Bacteroides ...    96   1e-18 
ref|XP_445404.1|  unnamed protein product [Candida glabrata]...    96   1e-18 
ref|NP_867282.1|  ribosomal large subunit pseudouridine synt...    96   1e-18 
ref|ZP_00814043.1|  Pseudouridylate synthase [Shewanella put...    96   1e-18 
ref|ZP_00349558.1|  COG0564: Pseudouridylate synthases, 23S ...    96   1e-18 
ref|NP_251665.1|  ribosomal large subunit pseudouridine synt...    96   1e-18 
gb|EAJ46271.1|  unknown [environmental sequence]                   96   2e-18 
gb|EAH48442.1|  unknown [environmental sequence]                   96   2e-18 
gb|EAF18896.1|  unknown [environmental sequence]                   96   2e-18 
ref|YP_794368.1|  Pseudouridylate synthase, 23S RNA-specific...    96   2e-18 
ref|YP_759725.1|  pseudouridine synthase, RluA family [Hypho...    96   2e-18 
gb|AAT92701.1|  YDL036C [Saccharomyces cerevisiae]                 96   2e-18 
emb|CAA63803.1|  hypothetical protein [Zymomonas mobilis]          96   2e-18 
ref|YP_390549.1|  Pseudouridine synthase [Thiomicrospira cru...    96   2e-18 
ref|YP_269010.1|  ribosomal large subunit pseudouridine synt...    96   2e-18 
ref|YP_515899.1|  ribosomal large subunit pseudouridine synt...    96   2e-18 
ref|YP_066760.1|  similar to pseudouridine synthase [Desulfo...    96   2e-18 
ref|NP_785711.1|  pseudouridylate synthase [Lactobacillus pl...    96   2e-18 
ref|NP_301874.1|  putative pseudouridine synthase [Mycobacte...    96   2e-18 
ref|NP_010248.1|  Mitochondrial tRNA pseudouridine synthase ...    96   2e-18 
ref|ZP_00952672.1|  ribosomal large subunit pseudouridine sy...    96   2e-18 
ref|YP_581082.1|  Pseudouridylate synthase [Psychrobacter cr...    96   2e-18 
ref|ZP_00425581.1|  Pseudouridine synthase, RluD [Burkholder...    96   2e-18 
ref|YP_811973.1|  Pseudouridylate synthase, 23S RNA-specific...    96   2e-18 
gb|EAI77904.1|  unknown [environmental sequence]                   95   2e-18 
gb|EAH77484.1|  unknown [environmental sequence]                   95   2e-18 
gb|EAC99829.1|  unknown [environmental sequence]                   95   2e-18 
gb|EAC33712.1|  unknown [environmental sequence]                   95   2e-18 
gb|EAE20299.1|  unknown [environmental sequence]                   95   2e-18 
ref|ZP_01309098.1|  hypothetical protein CburR_01001892 [Cox...    95   2e-18 
ref|ZP_01299545.1|  hypothetical protein CburD_01000669 [Cox...    95   2e-18 
ref|YP_338280.1|  ribosomal large subunit pseudouridine synt...    95   2e-18 
ref|NP_721437.1|  putative pseudouridylate synthase [Strepto...    95   2e-18 
ref|NP_245570.1|  hypothetical protein PM0633 [Pasteurella m...    95   2e-18 
ref|YP_075720.1|  23S rRNA pseudouridine synthase [Symbiobac...    95   2e-18 
ref|NP_878700.1|  ribosomal large subunit pseudouridine synt...    95   2e-18 
ref|ZP_01105405.1|  hypothetical protein FB2170_04365 [Flavo...    95   2e-18 
ref|ZP_01059022.1|  pseudouridylate synthase [Flavobacterium...    95   2e-18 
ref|YP_742787.1|  Pseudouridylate synthase [Alkalilimnicola ...    95   2e-18 
ref|YP_616093.1|  pseudouridine synthase [Sphingopyxis alask...    95   2e-18 
gb|EAK29585.1|  unknown [environmental sequence]                   95   3e-18 
gb|EAI28624.1|  unknown [environmental sequence]                   95   3e-18 
gb|EAE71844.1|  unknown [environmental sequence]                   95   3e-18 
gb|EAE69390.1|  unknown [environmental sequence]                   95   3e-18 
gb|EAE51973.1|  unknown [environmental sequence]                   95   3e-18 
gb|EAA80285.1|  unknown [environmental sequence]                   95   3e-18 
ref|YP_795834.1|  Pseudouridylate synthase, 23S RNA-specific...    95   3e-18 
ref|YP_600521.1|  Ribosomal large subunit pseudouridine synt...    95   3e-18 
ref|YP_578087.1|  Pseudouridine synthase, RluD [Nitrobacter ...    95   3e-18 
ref|XP_230464.3|  PREDICTED: similar to RNA pseudouridylate ...    95   3e-18 
ref|YP_037954.1|  ribosomal large subunit pseudouridine synt...    95   3e-18 
ref|NP_688102.1|  ribosomal large subunit pseudouridine synt...    95   3e-18 
ref|YP_382744.1|  Pseudouridine synthase, RluD [Synechococcu...    95   3e-18 
ref|YP_085233.1|  pseudouridylate synthase (pseudouridine sy...    95   3e-18 
ref|YP_303174.1|  Pseudouridine synthase, RluD [Ehrlichia ca...    95   3e-18 
ref|NP_980232.1|  ribosomal large subunit pseudouridine synt...    95   3e-18 
ref|YP_349893.1|  Pseudouridine synthase, RluD [Pseudomonas ...    95   3e-18 
ref|NP_218779.1|  hypothetical protein TP0339 [Treponema pal...    95   3e-18 
ref|YP_301035.1|  putative pseudouridylate synthase [Staphyl...    95   3e-18 
ref|YP_040584.1|  putative RNA pseudouridylate synthase [Sta...    95   3e-18 
sp|P44197|TRUC_HAEIN  tRNA pseudouridine synthase C (tRNA-ur...    95   3e-18 
ref|NP_607212.1|  hypothetical protein spyM18_1088 [Streptoc...    95   3e-18 
ref|ZP_01186973.1|  Pseudouridine synthase, RluD [Bacillus w...    95   3e-18 
ref|ZP_00720048.1|  COG0564: Pseudouridylate synthases, 23S ...    95   3e-18 
ref|NP_371721.1|  similar to ribosomal large subunit psudour...    95   3e-18 
gb|EAJ36856.1|  unknown [environmental sequence]                   94   4e-18 
gb|EAC21816.1|  unknown [environmental sequence]                   94   4e-18 
ref|NP_689053.1|  ribosomal large subunit pseudouridine synt...    94   4e-18 
ref|YP_344533.1|  Pseudouridine synthase, RluD [Nitrosococcu...    94   4e-18 
ref|YP_330596.1|  ribosomal large subunit pseudouridine synt...    94   4e-18 
ref|NP_833612.1|  Ribosomal large subunit pseudouridine synt...    94   4e-18 
ref|NP_359416.1|  Ribosomal large subunit pseudouridine synt...    94   4e-18 
ref|YP_340330.1|  23S rRNA pseudouridylate synthase [Pseudoa...    94   4e-18 
ref|YP_126636.1|  Ribosomal large subunit pseudouridine synt...    94   4e-18 
ref|NP_736454.1|  hypothetical protein gbs2021 [Streptococcu...    94   4e-18 
ref|ZP_01167257.1|  ribosomal large subunit pseudouridine sy...    94   4e-18 
ref|ZP_01043087.1|  Predicted pseudouridylate synthase, Rlu ...    94   4e-18 
ref|ZP_00837535.1|  Pseudouridylate synthase [Shewanella sp....    94   4e-18 
ref|ZP_00789175.1|  ribosomal large subunit pseudouridine sy...    94   4e-18 
ref|ZP_00783692.1|  ribosomal large subunit pseudouridine sy...    94   4e-18 
ref|ZP_00378786.1|  COG0564: Pseudouridylate synthases, 23S ...    94   4e-18 
ref|YP_809834.1|  Pseudouridylate synthase, 23S RNA-specific...    94   4e-18 
ref|NP_345571.1|  ribosomal large subunit pseudouridine synt...    94   4e-18 
ref|NP_735606.1|  hypothetical protein gbs1160 [Streptococcu...    94   4e-18 
gb|EAK03952.1|  unknown [environmental sequence]                   94   5e-18 
gb|EAJ12906.1|  unknown [environmental sequence]                   94   5e-18 
gb|EAF91833.1|  unknown [environmental sequence]                   94   5e-18 
gb|EAB55555.1|  unknown [environmental sequence]                   94   5e-18 
gb|EAA98296.1|  unknown [environmental sequence]                   94   5e-18 
gb|EAD86033.1|  unknown [environmental sequence]                   94   5e-18 
ref|ZP_01666364.1|  pseudouridine synthase, RluA family [The...    94   5e-18 
ref|ZP_01530236.1|  Pseudouridine synthase, RluD [Roseiflexu...    94   5e-18 
ref|XP_510721.2|  PREDICTED: RNA pseudouridylate synthase do...    94   5e-18 
ref|YP_631900.1|  pseudouridine synthase, RluA family [Myxoc...    94   5e-18 
ref|YP_465109.1|  Pseudouridine synthase, RluD [Anaeromyxoba...    94   5e-18 
ref|YP_505141.1|  ribosomal large subunit pseudouridine synt...    94   5e-18 
ref|YP_359965.1|  ribosomal large subunit pseudouridine synt...    94   5e-18 
ref|YP_282212.1|  ribosomal large subunit pseudouridine synt...    94   5e-18 
ref|NP_269281.1|  hypothetical protein SPy1127 [Streptococcu...    94   5e-18 
ref|YP_131109.1|  putative pseudouridine synthase Rlu family...    94   5e-18 
ref|NP_243408.1|  hypothetical protein BH2542 [Bacillus halo...    94   5e-18 
ref|ZP_01125329.1|  Pseudouridine synthase, RluD [Synechococ...    94   5e-18 
ref|ZP_01041095.1|  pseudouridylate synthase [Erythrobacter ...    94   5e-18 
ref|ZP_00785868.1|  ribosomal large subunit pseudouridine sy...    94   5e-18 
ref|ZP_00340883.1|  COG0564: Pseudouridylate synthases, 23S ...    94   5e-18 
gb|EAD69287.1|  unknown [environmental sequence]                   94   7e-18 
gb|EAC93583.1|  unknown [environmental sequence]                   94   7e-18 
gb|EAE46155.1|  unknown [environmental sequence]                   94   7e-18 
gb|EAA95219.1|  unknown [environmental sequence]                   94   7e-18 
ref|ZP_01655165.1|  pseudouridine synthase:pseudouridine syn...    94   7e-18 
gb|EAX31988.1|  ribosomal large subunit pseudouridine syntha...    94   7e-18 
ref|YP_804923.1|  Pseudouridylate synthase, 23S RNA-specific...    94   7e-18 
emb|CAJ48827.1|  ribosomal large subunit pseudouridine synth...    94   7e-18 
ref|ZP_01296586.1|  hypothetical protein PaerP_01001600 [Pse...    94   7e-18 
ref|XP_455734.1|  unnamed protein product [Kluyveromyces lac...    94   7e-18 
ref|YP_527094.1|  Pseudouridylate synthase [Saccharophagus d...    94   7e-18 
ref|YP_334298.1|  ribosomal large subunit pseudouridine synt...    94   7e-18 
ref|YP_208814.1|  RluC [Neisseria gonorrhoeae FA 1090] >gi|5...    94   7e-18 
ref|YP_196474.1|  SfhB protein homolog (peudouridylate synth...    94   7e-18 
ref|YP_180396.1|  ribosomal large subunit pseudouridine synt...    94   7e-18 
ref|ZP_01102850.1|  Ribosomal large subunit pseudouridine sy...    94   7e-18 
ref|ZP_00781992.1|  ribosomal large subunit pseudouridine sy...    94   7e-18 
ref|ZP_00372669.1|  ribosomal large subunit pseudouridine sy...    94   7e-18 
ref|ZP_00373623.1|  ribosomal large subunit pseudouridine sy...    94   7e-18 
ref|YP_109043.1|  ribosomal large subunit pseudouridine synt...    94   7e-18 
gb|EAK60936.1|  unknown [environmental sequence]                   93   9e-18 
gb|EAJ91450.1|  unknown [environmental sequence]                   93   9e-18 
gb|EAJ81254.1|  unknown [environmental sequence]                   93   9e-18 
gb|EAI18355.1|  unknown [environmental sequence]                   93   9e-18 
gb|EAB47141.1|  unknown [environmental sequence]                   93   9e-18 
gb|EAB36989.1|  unknown [environmental sequence]                   93   9e-18 
gb|EAY50906.1|  pseudouridine synthase, RluA family [Methano...    93   9e-18 
gb|EAY33333.1|  tRNA pseudouridine synthase C [Vibrio choler...    93   9e-18 
ref|ZP_01582786.1|  pseudouridine synthase [Delftia acidovor...    93   9e-18 
ref|ZP_01526234.1|  pseudouridine synthase, RluA family [Pse...    93   9e-18 
ref|ZP_01466202.1|  ribosomal large subunit pseudouridine sy...    93   9e-18 
emb|CAJ75097.1|  similar to pseudouridine synthase C [Candid...    93   9e-18 
ref|YP_442243.1|  ribosomal large subunit pseudouridine synt...    93   9e-18 
ref|NP_901488.1|  pseudouridine synthase [Chromobacterium vi...    93   9e-18 
ref|YP_219794.1|  ribosomal large subunit pseudouridine synt...    93   9e-18 
ref|ZP_01079387.1|  Pseudouridine synthase, RluD [Synechococ...    93   9e-18 
ref|ZP_00862981.1|  Pseudouridine synthase, RluD [Bradyrhizo...    93   9e-18 
ref|ZP_00487909.1|  COG0564: Pseudouridylate synthases, 23S ...    93   9e-18 
gb|EAL42449.1|  GA19422-PA [Drosophila pseudoobscura]              93   9e-18 
ref|ZP_00875816.1|  Pseudouridylate synthase [Streptococcus ...    93   9e-18 
ref|YP_803892.1|  Pseudouridylate synthase, 23S RNA-specific...    93   9e-18 
gb|EAK54226.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAK37046.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAK00612.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAI19299.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAH87721.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAD77699.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAG79465.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAC63266.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAC29705.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAF55967.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAC10443.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAB11990.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAE37653.1|  unknown [environmental sequence]                   93   1e-17 
gb|EAE17846.1|  unknown [environmental sequence]                   93   1e-17 
ref|ZP_01623530.1|  Pseudouridine synthase, RluD [Lyngbya sp...    93   1e-17 
ref|ZP_01617215.1|  Pseudouridine synthase, RluD [marine gam...    93   1e-17 
emb|CAJ69486.1|  putative pseudouridylate synthase [Clostrid...    93   1e-17 
ref|YP_727029.1|  pseudouridylate synthase, 23S RNA-specific...    93   1e-17 
gb|AAI17829.1|  RNA pseudouridylate synthase domain containi...    93   1e-17 
ref|YP_549429.1|  Pseudouridine synthase, RluD [Polaromonas ...    93   1e-17 
ref|NP_775626.1|  RNA pseudouridylate synthase domain contai...    93   1e-17 
ref|NP_974151.1|  RNA binding / pseudouridine synthase/ pseu...    93   1e-17 
ref|YP_559935.1|  Pseudouridine synthase, RluD [Burkholderia...    93   1e-17 
gb|AAF26765.1|AC007396_14  T4O12.25 [Arabidopsis thaliana]         93   1e-17 
ref|NP_533115.1|  pseudouridine synthase homolog [Agrobacter...    93   1e-17 
ref|YP_462196.1|  ribosomal large subunit pseudouridine synt...    93   1e-17 
gb|ABB82988.1|  putative RNA pseudouridylate synthase [uncul...    93   1e-17 
ref|YP_368465.1|  Pseudouridine synthase, RluD [Burkholderia...    93   1e-17 
ref|YP_155238.1|  Predicted pseudouridylate synthase, Rlu fa...    93   1e-17 
ref|NP_355395.1|  hypothetical protein AGR_C_4432 [Agrobacte...    93   1e-17 
ref|NP_224915.1|  predicted Pseudouridine Synthase [Chlamydo...    93   1e-17 
ref|ZP_00999117.1|  putative Pseudouridine synthase, Rlu [Oc...    93   1e-17 
ref|ZP_01681368.1|  pseudouridine synthase Rlu family protei...    93   1e-17 
ref|YP_747912.1|  pseudouridine synthase, RluA family protei...    93   1e-17 
ref|ZP_01313943.1|  pseudouridine synthase [Desulfuromonas a...    93   1e-17 
ref|ZP_00371287.1|  ribosomal large subunit pseudouridine sy...    93   1e-17 
ref|ZP_00240954.1|  ribosomal large subunit pseudouridine sy...    93   1e-17 
ref|ZP_00517595.1|  Pseudouridine synthase, RluD [Crocosphae...    93   1e-17 
ref|NP_230535.1|  pseudouridine synthase Rlu family protein ...    93   1e-17 
gb|EAJ09842.1|  unknown [environmental sequence]                   92   1e-17 
gb|EAE48970.1|  unknown [environmental sequence]                   92   1e-17 
gb|EAA93598.1|  unknown [environmental sequence]                   92   1e-17 
ref|ZP_01577471.1|  pseudouridine synthase, RluA family [Del...    92   1e-17 
ref|XP_510311.2|  PREDICTED: RNA pseudouridylate synthase do...    92   1e-17 
ref|YP_970630.1|  pseudouridine synthase [Acidovorax avenae ...    92   1e-17 
ref|XP_001096617.1|  PREDICTED: similar to RNA pseudouridyla...    92   1e-17 
ref|ZP_01272369.1|  Pseudouridine synthase, RluD [Psychrobac...    92   1e-17 
ref|ZP_01221515.1|  putative pseudouridine synthase Rlu fami...    92   1e-17 
ref|ZP_01634357.1|  hypothetical protein CdifQ_03003041 [Clo...    92   1e-17 
ref|NP_689473.1|  RNA pseudouridylate synthase domain contai...    92   1e-17 
gb|AAH16967.1|  C18B11 protein [Homo sapiens]                      92   1e-17 
gb|AAH07697.1|  RPUSD2 protein [Homo sapiens]                      92   1e-17 
ref|YP_493787.1|  hypothetical protein SAUSA300_1090 [Staphy...    92   1e-17 
ref|YP_319037.1|  pseudouridine synthase, RluD [Nitrobacter ...    92   1e-17 
ref|YP_340470.1|  tRNA pseudouridine synthase C [Pseudoalter...    92   1e-17 
ref|YP_219455.1|  putative pseudouridine synthase [Chlamydop...    92   1e-17 
ref|NP_970497.1|  Pseudouridylate synthase [Bdellovibrio bac...    92   1e-17 
ref|NP_879923.1|  ribosomal large subunit pseudouridine synt...    92   1e-17 
ref|NP_890133.1|  ribosomal large subunit pseudouridine synt...    92   1e-17 
ref|NP_660729.1|  ribosomal large subunit pseudouridine synt...    92   1e-17 
ref|YP_846994.1|  pseudouridine synthase, RluA family [Syntr...    92   1e-17 
ref|ZP_00394180.1|  COG0564: Pseudouridylate synthases, 23S ...    92   1e-17 
gb|EAJ84672.1|  unknown [environmental sequence]                   92   2e-17 
gb|EAI91586.1|  unknown [environmental sequence]                   92   2e-17 
gb|EAA90325.1|  unknown [environmental sequence]                   92   2e-17 
ref|ZP_01612365.1|  23S rRNA pseudouridylate synthase [Alter...    92   2e-17 
ref|ZP_01596036.1|  pseudouridine synthase [Marinomonas sp. ...    92   2e-17 
ref|ZP_01593756.1|  pseudouridine synthase, RluA family [Geo...    92   2e-17 
ref|YP_894017.1|  ribosomal large subunit pseudouridylate sy...    92   2e-17 
ref|YP_731894.1|  23S RNA-specific pseudouridylate synthase ...    92   2e-17 
ref|YP_969540.1|  pseudouridine synthase, RluA family [Acido...    92   2e-17 
ref|YP_588650.1|  ribosomal large subunit pseudouridine synt...    92   2e-17 
gb|AAB57767.1|  orf-X; hypothetical protein; Method: concept...    92   2e-17 
ref|YP_166649.1|  ribosomal large subunit pseudouridine synt...    92   2e-17 
ref|NP_951144.1|  ribosomal large subunit pseudouridine synt...    92   2e-17 
ref|NP_346438.1|  ribosomal large subunit pseudouridine synt...    92   2e-17 
ref|NP_885368.1|  ribosomal large subunit pseudouridine synt...    92   2e-17 
ref|NP_871538.1|  hypothetical protein WGLp535 [Wigglesworth...    92   2e-17 
ref|ZP_01148785.1|  Pseudouridine synthase, RluD [Desulfotom...    92   2e-17 
ref|ZP_01093729.1|  ribosomal large subunit pseudouridine sy...    92   2e-17 
ref|ZP_01074826.1|  ribosomal large subunit pseudouridine sy...    92   2e-17 
ref|YP_742268.1|  pseudouridine synthase, RluA family [Alkal...    92   2e-17 
ref|YP_662744.1|  Pseudouridylate synthase [Pseudoalteromona...    92   2e-17 
ref|YP_772881.1|  pseudouridine synthase, RluA family [Burkh...    92   2e-17 
ref|YP_620515.1|  Pseudouridine synthase, RluD [Burkholderia...    92   2e-17 
ref|ZP_00982041.1|  COG0564: Pseudouridylate synthases, 23S ...    92   2e-17 
ref|ZP_01407890.1|  hypothetical protein SpneT_02001674 [Str...    92   2e-17 
ref|YP_818163.1|  Pseudouridylate synthase, 23S RNA-specific...    92   2e-17 
gb|EAK45043.1|  unknown [environmental sequence]                   92   2e-17 
gb|EAI59380.1|  unknown [environmental sequence]                   92   2e-17 
gb|EAD55280.1|  unknown [environmental sequence]                   92   2e-17 
gb|EAY40924.1|  pseudouridine synthase Rlu family protein [V...    92   2e-17 
ref|ZP_01614120.1|  tRNA pseudouridine synthase C [Alteromon...    92   2e-17 
ref|ZP_01519594.1|  pseudouridine synthase [Comamonas testos...    92   2e-17 
emb|CAL55387.1|  COG0564: Pseudouridylate synthases, 23S RNA...    92   2e-17 
ref|ZP_01466412.1|  ribosomal large subunit pseudouridine sy...    92   2e-17 
ref|ZP_01311850.1|  Pseudouridine synthase, RluD [Desulfurom...    92   2e-17 
ref|XP_544620.2|  PREDICTED: similar to RNA pseudouridylate ...    92   2e-17 
ref|YP_278713.1|  ribosomal large subunit pseudouridine synt...    92   2e-17 
ref|YP_386372.1|  Pseudouridine synthase, RluD [Geobacter me...    92   2e-17 
ref|NP_645897.1|  hypothetical protein MW1080 [Staphylococcu...    92   2e-17 
ref|ZP_01016544.1|  putative ribosomal large subunit pseudou...    92   2e-17 
ref|YP_902847.1|  pseudouridine synthase, RluA family [Pelob...    92   2e-17 
ref|YP_900254.1|  pseudouridine synthase, RluA family [Pelob...    92   2e-17 
ref|ZP_00533630.1|  Pseudouridylate synthase [Chlorobium pha...    92   2e-17 
ref|ZP_00349525.1|  COG0564: Pseudouridylate synthases, 23S ...    92   2e-17 
ref|YP_517523.1|  hypothetical protein DSY1290 [Desulfitobac...    92   2e-17 
gb|EAF99767.1|  unknown [environmental sequence]                   91   3e-17 
ref|ZP_01570288.1|  pseudouridine synthase, RluA family [Bur...    91   3e-17 
ref|ZP_01358319.1|  Pseudouridine synthase [Roseiflexus sp. ...    91   3e-17 
ref|YP_495729.1|  Pseudouridylate synthase [Novosphingobium ...    91   3e-17 
ref|NP_001058594.1|  Os06g0717400 [Oryza sativa (japonica cu...    91   3e-17 
ref|NP_282921.1|  ribosomal large subunit pseudouridine synt...    91   3e-17 
ref|NP_438215.1|  pseudouridine synthase-like protein [Haemo...    91   3e-17 
ref|YP_580392.1|  Pseudouridine synthase, RluD [Psychrobacte...    91   3e-17 
ref|ZP_00630914.1|  Pseudouridine synthase, RluD [Paracoccus...    91   3e-17 
ref|YP_680057.1|  pseudouridylate synthase, 23S RNA-specific...    91   3e-17 
ref|ZP_00237206.1|  ribosomal large subunit pseudouridine sy...    91   3e-17 
gb|EAK20054.1|  unknown [environmental sequence]                   91   4e-17 
gb|EAI95925.1|  unknown [environmental sequence]                   91   4e-17 
gb|EAF80351.1|  unknown [environmental sequence]                   91   4e-17 
emb|CAJ48718.1|  ribosomal large subunit pseudouridine synth...    91   4e-17 
ref|ZP_01305910.1|  hypothetical protein RED65_11299 [Oceano...    91   4e-17 
ref|YP_477353.1|  pseudouridine synthase, RluA family [Synec...    91   4e-17 
ref|YP_035519.1|  ribosomal large subunit pseudouridylate sy...    91   4e-17 
ref|YP_082785.1|  ribosomal large subunit pseudouridine synt...    91   4e-17 
ref|YP_264541.1|  putative pseudouridylate synthase, 23S rRN...    91   4e-17 
ref|NP_695352.1|  widely conserved hypothetical protein in t...    91   4e-17 
ref|YP_176014.1|  ribosomal large subunit pseudouridine synt...    91   4e-17 
ref|NP_389429.2|  hypothetical protein BSU15460 [Bacillus su...    91   4e-17 
ref|ZP_01179687.1|  Pseudouridine synthase, RluD [Bacillus c...    91   4e-17 
ref|ZP_01146821.1|  ribosomal large subunit pseudouridine sy...    91   4e-17 
ref|ZP_01006091.1|  putative pseudouridylate synthase specif...    91   4e-17 
ref|ZP_00958176.1|  ribosomal large subunit pseudouridine sy...    91   4e-17 
ref|ZP_00513820.1|  Pseudouridine synthase, RluD [Crocosphae...    91   4e-17 
ref|ZP_00157549.1|  COG0564: Pseudouridylate synthases, 23S ...    91   4e-17 
gb|EAH36395.1|  unknown [environmental sequence]                   91   6e-17 
gb|EAD22119.1|  unknown [environmental sequence]                   91   6e-17 
ref|XP_583460.3|  PREDICTED: similar to RPUSD2 protein isofo...    91   6e-17 
ref|ZP_01559370.1|  pseudouridine synthase, RluA family [Bur...    91   6e-17 
gb|ABA03164.1|  RluA [Vibrio harveyi]                              91   6e-17 
ref|YP_584585.1|  Pseudouridine synthase, RluD [Ralstonia me...    91   6e-17 
ref|ZP_01274282.1|  Pseudouridine synthase, RluD [Lactobacil...    91   6e-17 
ref|YP_638419.1|  pseudouridine synthase [Mycobacterium sp. ...    91   6e-17 
ref|XP_456184.1|  unnamed protein product [Kluyveromyces lac...    91   6e-17 
ref|YP_511343.1|  Pseudouridine synthase, RluD [Jannaschia s...    91   6e-17 
ref|YP_507302.1|  ribosomal large subunit pseudouridine synt...    91   6e-17 
ref|YP_506438.1|  ribosomal large subunit pseudouridine synt...    91   6e-17 
ref|YP_456786.1|  ribosomal large subunit pseudouridine synt...    91   6e-17 
ref|YP_302945.1|  Pseudouridine synthase, RluD [Ehrlichia ca...    91   6e-17 
ref|NP_973174.1|  RNA pseudouridylate synthase family protei...    91   6e-17 
ref|ZP_01109545.1|  pseudouridylate synthase, 23S RNA-specif...    91   6e-17 
ref|ZP_01485714.1|  hypothetical protein VchoV5_02001685 [Vi...    91   6e-17 
ref|YP_901513.1|  pseudouridine synthase [Pelobacter propion...    91   6e-17 
ref|ZP_00544587.1|  Pseudouridine synthase, RluD [Ehrlichia ...    91   6e-17 
ref|YP_827055.1|  pseudouridine synthase, RluA family [Solib...    91   6e-17 
ref|YP_027476.1|  RNA pseudouridylate synthase [Bacillus ant...    91   6e-17 
gb|EAI61763.1|  unknown [environmental sequence]                   90   7e-17 
gb|EAH75135.1|  unknown [environmental sequence]                   90   7e-17 
gb|EAD21253.1|  unknown [environmental sequence]                   90   7e-17 
gb|EAB50032.1|  unknown [environmental sequence]                   90   7e-17 
gb|EAE35803.1|  unknown [environmental sequence]                   90   7e-17 
ref|ZP_01671887.1|  pseudouridine synthase, RluA family [Ana...    90   7e-17 
ref|ZP_01512559.1|  pseudouridine synthase, RluA family [Bur...    90   7e-17 
ref|YP_743921.1|  ribosomal large subunit pseudouridine synt...    90   7e-17 
ref|YP_436996.1|  Pseudouridylate synthases, 23S RNA-specifi...    90   7e-17 
ref|YP_194441.1|  ribosomal large subunit pseudouridine synt...    90   7e-17 
ref|NP_908213.1|  PUTATIVE RIBOSOMAL PSEUDOURIDINE SYNTHASE ...    90   7e-17 
ref|NP_599568.1|  23S RNA-specific pseudouridylate synthase ...    90   7e-17 
ref|NP_464494.1|  hypothetical protein lmo0969 [Listeria mon...    90   7e-17 
ref|ZP_01168227.1|  putative pseudouridine synthase Rlu fami...    90   7e-17 
ref|ZP_01068746.1|  RNA pseudouridine synthase family protei...    90   7e-17 
ref|ZP_00918930.1|  Pseudouridine synthase, RluD [Rhodobacte...    90   7e-17 
ref|ZP_00368142.1|  RNA pseudouridylate synthase family [Cam...    90   7e-17 
ref|ZP_00233854.1|  ribosomal large subunit pseudouridine sy...    90   7e-17 
gb|EAK71593.1|  unknown [environmental sequence]                   90   9e-17 
gb|EAD48652.1|  unknown [environmental sequence]                   90   9e-17 
ref|ZP_01673559.1|  ribosomal large subunit pseudouridine sy...    90   9e-17 
ref|ZP_01543025.1|  pseudouridine synthase [Shewanella woody...    90   9e-17 
ref|YP_806145.1|  Pseudouridylate synthase, 23S RNA-specific...    90   9e-17 
ref|YP_699398.1|  pseudouridylate synthase family protein, y...    90   9e-17 
gb|EAT40809.1|  conserved hypothetical protein [Aedes aegypti]     90   9e-17 
ref|YP_474213.1|  pseudouridine synthase, RluA family [Synec...    90   9e-17 
ref|NP_765086.1|  hypothetical protein SE1531 [Staphylococcu...    90   9e-17 
gb|EAH45656.1|  unknown [environmental sequence]                   89   1e-16 
gb|EAG56535.1|  unknown [environmental sequence]                   89   1e-16 
gb|EAC83621.1|  unknown [environmental sequence]                   89   1e-16 
gb|EAF88216.1|  unknown [environmental sequence]                   89   1e-16 
gb|EAE93841.1|  unknown [environmental sequence]                   89   1e-16 
gb|EAE45077.1|  unknown [environmental sequence]                   89   1e-16 
ref|ZP_01662669.1|  putative ribosomal large subunit pseudou...    89   1e-16 
ref|YP_974317.1|  ribosomal large subunit pseudouridine synt...    89   1e-16 
gb|ABE81887.1|  Pseudouridine synthase, RluD [Medicago trunc...    89   1e-16 
ref|YP_573645.1|  Pseudouridine synthase, RluD [Chromohaloba...    89   1e-16 
ref|YP_536193.1|  Ribosomal large subunit pseudouridine synt...    89   1e-16 
ref|NP_977726.1|  ribosomal large subunit pseudouridine synt...    89   1e-16 
ref|NP_273256.1|  ribosomal large subunit pseudouridine synt...    89   1e-16 
ref|YP_047441.1|  ribosomal large subunit pseudouridine synt...    89   1e-16 
ref|ZP_01163111.1|  pseudouridylate synthase [Lactobacillus ...    89   1e-16 
ref|ZP_01056445.1|  ribosomal large subunit pseudouridine sy...    89   1e-16 
ref|YP_679802.1|  pseudouridine synthase, 23S RNA-specific [...    89   1e-16 
gb|EAI88704.1|  unknown [environmental sequence]                   89   2e-16 
gb|EAI10713.1|  unknown [environmental sequence]                   89   2e-16 
gb|EAH64273.1|  unknown [environmental sequence]                   89   2e-16 
gb|EAG13500.1|  unknown [environmental sequence]                   89   2e-16 
gb|EAC57979.1|  unknown [environmental sequence]                   89   2e-16 
gb|EAF28765.1|  unknown [environmental sequence]                   89   2e-16 
ref|YP_849150.1|  ribosomal large subunit pseudouridine synt...    89   2e-16 
ref|XP_313685.3|  ENSANGP00000013169 [Anopheles gambiae str....    89   2e-16 
gb|EAU00759.1|  ribosomal large subunit pseudouridine syntha...    89   2e-16 
ref|ZP_01389784.1|  Pseudouridine synthase, RluD [Geobacter ...    89   2e-16 
ref|ZP_01376571.1|  hypothetical protein Ccur5_01000675 [Cam...    89   2e-16 
ref|ZP_01280073.1|  Pseudouridine synthase [Mycobacterium sp...    89   2e-16 
ref|NP_831075.1|  Ribosomal large subunit pseudouridine synt...    89   2e-16 
ref|NP_764427.1|  hypothetical protein SE0872 [Staphylococcu...    89   2e-16 
ref|YP_253027.1|  hypothetical protein SH1112 [Staphylococcu...    89   2e-16 
ref|YP_066493.1|  similar to ribosomal large subunit pseudou...    89   2e-16 
ref|NP_988130.1|  Pseudouridine synthase:Pseudouridine synth...    89   2e-16 
ref|NP_736938.1|  putative ribosomal large subunit pseudouri...    89   2e-16 
ref|NP_014575.1|  DRAP deaminase, catalyzes the third step o...    89   2e-16 
ref|ZP_01116137.1|  hypothetical protein MED297_15425 [Reine...    89   2e-16 
ref|ZP_00949497.1|  hypothetical protein CA2559_02735 [Croce...    89   2e-16 
ref|ZP_00915867.1|  Pseudouridine synthase, RluD [Rhodobacte...    89   2e-16 
ref|YP_959377.1|  pseudouridine synthase [Marinobacter aquae...    89   2e-16 
ref|ZP_00602655.1|  Pseudouridine synthase, RluD [Enterococc...    89   2e-16 
gb|EAK22852.1|  unknown [environmental sequence]                   89   2e-16 
gb|EAD72331.1|  unknown [environmental sequence]                   89   2e-16 
gb|EAG10856.1|  unknown [environmental sequence]                   89   2e-16 
ref|YP_933118.1|  ribosomal large subunit pseudouridine synt...    89   2e-16 
ref|ZP_01602274.1|  Pseudouridylate synthase [Shewanella pea...    89   2e-16 
ref|YP_614112.1|  Pseudouridine synthase, RluD [Silicibacter...    89   2e-16 
emb|CAJ71871.1|  similar to pseudouridine synthase C [Candid...    89   2e-16 
ref|YP_394603.1|  Pseudouridine synthase, RluD [Thiomicrospi...    89   2e-16 
ref|YP_563304.1|  Pseudouridine synthase, RluD [Shewanella d...    89   2e-16 
gb|AAF32394.1|AF224466_1  putative pseudouridylate synthase ...    89   2e-16 
ref|YP_247705.1|  conserved hypothetical pseudouridine synth...    89   2e-16 
ref|YP_902605.1|  pseudouridine synthase, RluA family [Pelob...    89   2e-16 
gb|EAI89539.1|  unknown [environmental sequence]                   88   3e-16 
gb|EAB82191.1|  unknown [environmental sequence]                   88   3e-16 
gb|EAE83897.1|  unknown [environmental sequence]                   88   3e-16 
ref|YP_692781.1|  Ribosomal large subunit pseudouridine synt...    88   3e-16 
ref|YP_696800.1|  pseudouridine synthase, RluA family [Clost...    88   3e-16 
ref|YP_467378.1|  Pseudouridine synthase, RluD [Anaeromyxoba...    88   3e-16 
ref|XP_459803.1|  hypothetical protein DEHA0E11968g [Debaryo...    88   3e-16 
ref|YP_316934.1|  pseudouridine synthase [Nitrobacter winogr...    88   3e-16 
ref|XP_624656.1|  PREDICTED: similar to RluA-1 CG31719-PA, i...    88   3e-16 
ref|YP_383022.1|  Pseudouridine synthase, RluD [Geobacter me...    88   3e-16 
ref|YP_013590.1|  ribosomal large subunit pseudouridine synt...    88   3e-16 
ref|NP_986971.1|  AGR305Wp [Ashbya gossypii ATCC 10895] >gi|...    88   3e-16 
ref|NP_640600.1|  pseudouridylate synthase [Xanthomonas axon...    88   3e-16 
ref|YP_417245.1|  probable RNA pseudouridylate synthase [Sta...    88   3e-16 
ref|YP_041316.1|  RNA pseudouridylate synthase [Staphylococc...    88   3e-16 
ref|NP_906406.1|  PUTATIVE RIBOSOMAL PSEUDOURIDINE SYNTHASE ...    88   3e-16 
ref|YP_530107.1|  pseudouridine synthase [Rhodopseudomonas p...    88   3e-16 
ref|YP_810719.1|  Pseudouridylate synthase, 23S RNA-specific...    88   3e-16 
ref|ZP_00231418.1|  ribosomal large subunit pseudouridine sy...    88   3e-16 
gb|EAK59342.1|  unknown [environmental sequence]                   88   4e-16 
gb|EAJ63227.1|  unknown [environmental sequence]                   88   4e-16 
gb|EAH13573.1|  unknown [environmental sequence]                   88   4e-16 
gb|EAB61313.1|  unknown [environmental sequence]                   88   4e-16 
ref|ZP_01552288.1|  Pseudouridine synthase, RluD [Methylophi...    88   4e-16 
ref|ZP_01544781.1|  pseudouridine synthase [Oenococcus oeni ...    88   4e-16 
ref|YP_188346.1|  ribosomal large subunit pseudouridine synt...    88   4e-16 
ref|NP_951728.1|  ribosomal large subunit pseudouridine synt...    88   4e-16 
ref|NP_950383.1|  pseudouridylate synthase [Onion yellows ph...    88   4e-16 
ref|NP_865407.1|  ribosomal large subunit pseudouridine synt...    88   4e-16 
ref|ZP_00651517.1|  Pseudouridine synthase, RluD [Xylella fa...    88   4e-16 
ref|NP_372374.1|  hypothetical protein SAV1850 [Staphylococc...    88   4e-16 
gb|EAK10119.1|  unknown [environmental sequence]                   87   5e-16 
gb|EAG38640.1|  unknown [environmental sequence]                   87   5e-16 
gb|EAF95796.1|  unknown [environmental sequence]                   87   5e-16 
gb|EAC25146.1|  unknown [environmental sequence]                   87   5e-16 
gb|EAF11171.1|  unknown [environmental sequence]                   87   5e-16 
gb|EAE36480.1|  unknown [environmental sequence]                   87   5e-16 
ref|ZP_01691464.1|  pseudouridine synthase, RluD [Microscill...    87   5e-16 
ref|YP_804697.1|  Pseudouridylate synthase, 23S RNA-specific...    87   5e-16 
ref|ZP_01455610.1|  Pseudouridine synthase, RluD [Thermoanae...    87   5e-16 
ref|ZP_01308802.1|  ribosomal large subunit pseudouridine sy...    87   5e-16 
emb|CAB46588.1|  hypothetical protein [Yersinia enterocolitica]    87   5e-16 
ref|YP_433390.1|  Pseudouridylate synthases, 23S RNA-specifi...    87   5e-16 
ref|YP_191234.1|  Ribosomal large subunit pseudouridine synt...    87   5e-16 
ref|YP_352471.1|  putative Pseudouridine synthase, Rlu [Rhod...    87   5e-16 
ref|NP_470305.1|  hypothetical protein lin0968 [Listeria inn...    87   5e-16 
ref|NP_563038.1|  hypothetical protein CPE2122 [Clostridium ...    87   5e-16 
ref|ZP_01036067.1|  ribosomal large subunit pseudouridine sy...    87   5e-16 
ref|ZP_00682081.1|  Pseudouridine synthase, RluD [Xylella fa...    87   5e-16 
ref|YP_927008.1|  pseudouridylate synthase [Shewanella amazo...    87   6e-16 
gb|EAU91801.1|  hypothetical protein CC1G_04569 [Coprinopsis...    87   6e-16 
ref|YP_193558.1|  ribosomal large subunit pseudouridine synt...    87   6e-16 
ref|NP_623370.1|  Pseudouridylate synthase, 23S RNA-specific...    87   6e-16 
ref|NP_299883.1|  pseudouridylate synthase [Xylella fastidio...    87   6e-16 
ref|NP_635620.1|  pseudouridylate synthase [Xanthomonas camp...    87   6e-16 
ref|YP_253632.1|  hypothetical protein SH1717 [Staphylococcu...    87   6e-16 
ref|NP_592881.1|  hypothetical protein SPAC18B11.02c [Schizo...    87   6e-16 
ref|NP_326129.1|  RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNT...    87   6e-16 
ref|YP_749953.1|  Pseudouridylate synthase [Shewanella frigi...    87   6e-16 
ref|XP_638115.1|  hypothetical protein DDBDRAFT_0186558 [Dic...    87   6e-16 
ref|ZP_00369605.1|  ribosomal large subunit pseudouridine sy...    87   6e-16 
gb|EAI87442.1|  unknown [environmental sequence]                   87   8e-16 
gb|EAI21659.1|  unknown [environmental sequence]                   87   8e-16 
ref|YP_700847.1|  possible pseudouridylate synthase [Rhodoco...    87   8e-16 
gb|EAT47670.1|  ribosomal pseudouridine synthase [Aedes aegy...    87   8e-16 
ref|YP_463271.1|  Pseudouridine synthase, RluD [Anaeromyxoba...    87   8e-16 
ref|YP_212193.1|  putative RNA pseudouridylate synthase [Bac...    87   8e-16 
ref|YP_007705.1|  hypothetical protein pc0706 [Candidatus Pr...    87   8e-16 
ref|NP_969610.1|  Pseudouridylate synthase, 23S RNA-specific...    87   8e-16 
ref|NP_968406.1|  Pseudouridine synthase Rlu family protein ...    87   8e-16 
ref|NP_078147.1|  pseudouridine synthase (uracil hydrolase) ...    87   8e-16 
ref|ZP_01126371.1|  ribosomal large subunit pseudouridine sy...    87   8e-16 
ref|ZP_00208608.1|  COG0564: Pseudouridylate synthases, 23S ...    87   8e-16 
gb|EAK59470.1|  unknown [environmental sequence]                   86   1e-15 
gb|EAK42608.1|  unknown [environmental sequence]                   86   1e-15 
gb|EAD94726.1|  unknown [environmental sequence]                   86   1e-15 
ref|YP_971020.1|  pseudouridine synthase [Acidovorax avenae ...    86   1e-15 
ref|XP_426389.2|  PREDICTED: similar to RPUSD2 protein [Gall...    86   1e-15 
ref|ZP_01462942.1|  ribosomal large subunit pseudouridine sy...    86   1e-15 
ref|ZP_01426853.1|  Pseudouridine synthase, RluD [Herpetosip...    86   1e-15 
ref|NP_219609.1|  predicted pseudouridine synthetase family ...    86   1e-15 
ref|YP_361981.1|  Pseudouridylate synthase [Xanthomonas camp...    86   1e-15 
ref|YP_099823.1|  RNA pseudouridylate synthase [Bacteroides ...    86   1e-15 
ref|XP_505321.1|  hypothetical protein [Yarrowia lipolytica]...    86   1e-15 
ref|NP_011685.1|  Pseudouridine synthase responsible for mod...    86   1e-15 
ref|XP_570259.1|  hypothetical protein [Cryptococcus neoform...    86   1e-15 
gb|EAH53919.1|  unknown [environmental sequence]                   86   1e-15 
gb|EAF99314.1|  unknown [environmental sequence]                   86   1e-15 
gb|EAC02553.1|  unknown [environmental sequence]                   86   1e-15 
ref|ZP_01586867.1|  pseudouridine synthase, RluA family [Din...    86   1e-15 
ref|YP_802813.1|  RluD [Buchnera aphidicola str. Cc (Cinara ...    86   1e-15 
ref|XP_553504.2|  ENSANGP00000026660 [Anopheles gambiae str....    86   1e-15 
ref|YP_762171.1|  pseudouridine synthase, RluA family [Hypho...    86   1e-15 
ref|ZP_01359348.1|  Pseudouridylate synthase [Roseiflexus sp...    86   1e-15 
ref|YP_088362.1|  RluA protein [Mannheimia succiniciproducen...    86   1e-15 
ref|NP_780162.1|  pseudouridylate synthase [Xylella fastidio...    86   1e-15 
ref|NP_885484.1|  ribosomal large subunit pseudouridine synt...    86   1e-15 
pir||A81748  ribosomal large chain pseudouridine synthase D ...    86   1e-15 
ref|ZP_01155374.1|  ribosomal large subunit pseudouridine sy...    86   1e-15 
ref|ZP_00800830.1|  Pseudouridine synthase, RluD [Alkaliphil...    86   1e-15 
ref|ZP_00503644.1|  Pseudouridylate synthase [Clostridium th...    86   1e-15 
ref|XP_768814.1|  hypothetical protein GLP_516_41318_40566 [...    86   1e-15 
gb|EAK74791.1|  unknown [environmental sequence]                   86   2e-15 
gb|EAE89072.1|  unknown [environmental sequence]                   86   2e-15 
gb|EAA93686.1|  unknown [environmental sequence]                   86   2e-15 
gb|EAT99140.1|  hypothetical RNA pseudouridine synthase [Cam...    86   2e-15 
ref|ZP_01375287.1|  hypothetical protein Ccon1_01000140 [Cam...    86   2e-15 
ref|ZP_01375131.1|  hypothetical protein Ccon1_01000310 [Cam...    86   2e-15 
gb|AAO22876.1|  AgmF [Myxococcus xanthus]                          86   2e-15 
ref|YP_263561.1|  putative pseudouridine synthase [Psychroba...    86   2e-15 
ref|NP_609411.1|  RluA-2 CG6187-PA [Drosophila melanogaster]...    86   2e-15 
ref|YP_423168.1|  Hypothetical pseudouridine synthase in lpd...    86   2e-15 
ref|YP_008790.1|  putative 23S rRNA pseudouridine synthase [...    86   2e-15 
ref|ZP_00779335.1|  Pseudouridine synthase, RluD [Thermoanae...    86   2e-15 
ref|ZP_00584522.1|  Pseudouridine synthase, RluD [Shewanella...    86   2e-15 
ref|ZP_00874460.1|  Pseudouridine synthase, RluD [Streptococ...    86   2e-15 
gb|EAK64610.1|  unknown [environmental sequence]                   85   2e-15 
gb|EAJ81368.1|  unknown [environmental sequence]                   85   2e-15 
gb|EAJ33274.1|  unknown [environmental sequence]                   85   2e-15 
gb|EAF61143.1|  unknown [environmental sequence]                   85   2e-15 
gb|EAB85356.1|  unknown [environmental sequence]                   85   2e-15 
ref|ZP_01594692.1|  pseudouridine synthase, RluA family [Geo...    85   2e-15 
ref|ZP_01464064.1|  ribosomal large subunit pseudouridine sy...    85   2e-15 
ref|YP_704834.1|  pseudouridylate synthase [Rhodococcus sp. ...    85   2e-15 
ref|ZP_01362089.1|  Pseudouridine synthase [Clostridium sp. ...    85   2e-15 
ref|YP_344820.1|  Pseudouridine synthase, RluD [Nitrosococcu...    85   2e-15 
ref|NP_757399.1|  pseudouridine synthase [Mycoplasma penetra...    85   2e-15 
gb|EAK26346.1|  unknown [environmental sequence]                   85   3e-15 
gb|EAJ22822.1|  unknown [environmental sequence]                   85   3e-15 
gb|EAI64845.1|  unknown [environmental sequence]                   85   3e-15 
gb|EAB85554.1|  unknown [environmental sequence]                   85   3e-15 
gb|EAE20797.1|  unknown [environmental sequence]                   85   3e-15 
ref|ZP_01377929.1|  hypothetical protein Cjejd_01001386 [Cam...    85   3e-15 
ref|YP_328484.1|  ribosomal large subunit pseudouridine synt...    85   3e-15 
ref|NP_974416.1|  RNA binding / pseudouridine synthase/ pseu...    85   3e-15 
ref|NP_710404.1|  ribosomal large subunit pseudouridine synt...    85   3e-15 
ref|YP_422774.1|  Hypothetical pseudouridine synthase in lpd...    85   3e-15 
ref|NP_281244.1|  putative ribosomal pseudouridine synthase ...    85   3e-15 
ref|YP_815250.1|  Pseudouridylate synthase, 23S RNA-specific...    85   3e-15 
gb|EAH58267.1|  unknown [environmental sequence]                   84   4e-15 
gb|EAH51294.1|  unknown [environmental sequence]                   84   4e-15 
gb|EAF88993.1|  unknown [environmental sequence]                   84   4e-15 
gb|EAF48623.1|  unknown [environmental sequence]                   84   4e-15 
ref|YP_886109.1|  RNA pseudouridine synthase family protein ...    84   4e-15 
ref|YP_574939.1|  pseudouridine synthase [Chromohalobacter s...    84   4e-15 
ref|YP_327907.1|  tRNA pseudouridine synthase A [Chlamydia t...    84   4e-15 
ref|YP_283119.1|  ribosomal large subunit pseudouridine synt...    84   4e-15 
ref|XP_693475.1|  PREDICTED: similar to RNA pseudouridylate ...    84   4e-15 
ref|YP_178049.1|  RNA pseudouridylate synthase family protei...    84   4e-15 
ref|NP_954393.1|  RNA pseudouridine synthase family protein ...    84   4e-15 
ref|NP_270003.1|  hypothetical protein SPy2063 [Streptococcu...    84   4e-15 
ref|NP_644614.1|  pseudouridylate synthase [Xanthomonas axon...    84   4e-15 
ref|YP_515534.1|  ribosomal large subunit pseudouridine synt...    84   4e-15 
ref|YP_366153.1|  putative pseudouridylate synthase [Xanthom...    84   4e-15 
ref|ZP_01072163.1|  ribosomal large subunit pseudouridylate ...    84   4e-15 
ref|YP_820779.1|  Pseudouridylate synthase, 23S RNA-specific...    84   4e-15 
gb|EAK10498.1|  unknown [environmental sequence]                   84   5e-15 
gb|EAB42595.1|  unknown [environmental sequence]                   84   5e-15 
ref|ZP_01532371.1|  pseudouridine synthase [Roseiflexus cast...    84   5e-15 
gb|AAO39454.1|  RH45372p [Drosophila melanogaster]                 84   5e-15 
ref|NP_723592.1|  RluA-1 CG31719-PA, isoform A [Drosophila m...    84   5e-15 
ref|NP_639523.1|  pseudouridylate synthase [Xanthomonas camp...    84   5e-15 
ref|NP_968282.1|  Pseudouridine synthase Rlu family protein ...    84   5e-15 
ref|NP_777977.1|  ribosomal large subunit pseudouridine synt...    84   5e-15 
ref|ZP_01183058.1|  Pseudouridine synthase, RluD [Bacillus w...    84   5e-15 
ref|ZP_00964275.1|  ribosomal large subunit pseudouridine sy...    84   5e-15 
ref|ZP_00953598.1|  ribosomal large subunit pseudouridine sy...    84   5e-15 
ref|ZP_00369026.1|  Ribosomal large subunit pseudouridine sy...    84   5e-15 
gb|EAH60732.1|  unknown [environmental sequence]                   84   7e-15 
gb|EAF69996.1|  unknown [environmental sequence]                   84   7e-15 
ref|ZP_01518647.1|  pseudouridine synthase [Comamonas testos...    84   7e-15 
ref|YP_516743.1|  hypothetical protein DSY0510 [Desulfitobac...    84   7e-15 
ref|NP_827883.1|  ribosomal pseudouridine synthase [Streptom...    84   7e-15 
ref|YP_909994.1|  hypothetical protein BAD_1131 [Bifidobacte...    84   7e-15 
ref|ZP_01371334.1|  pseudouridine synthase [Desulfitobacteri...    84   7e-15 
gb|EAI91777.1|  unknown [environmental sequence]                   83   9e-15 
gb|EAB82630.1|  unknown [environmental sequence]                   83   9e-15 
gb|EAD98652.1|  unknown [environmental sequence]                   83   9e-15 
ref|YP_808439.1|  Pseudouridylate synthase, 23S RNA-specific...    83   9e-15 
ref|YP_597497.1|  ribosomal large subunit pseudouridine synt...    83   9e-15 
ref|ZP_01632866.1|  hypothetical protein CdifQ_03004153 [Clo...    83   9e-15 
ref|XP_781802.1|  PREDICTED: hypothetical protein [Strongylo...    83   9e-15 
ref|YP_287848.1|  ribosomal large subunit pseudouridine synt...    83   9e-15 
ref|YP_279252.1|  ribosomal large subunit pseudouridine synt...    83   9e-15 
ref|YP_281207.1|  ribosomal large subunit pseudouridine synt...    83   9e-15 
ref|YP_139882.1|  ribosomal large subunit pseudouridine synt...    83   9e-15 
ref|YP_115967.1|  ribosomal large subunit pseudouridine synt...    83   9e-15 
ref|NP_665565.1|  putative ribosomal large subunit pseudouri...    83   9e-15 
ref|NP_220177.1|  (Pseudouridine Synthase) [Chlamydia tracho...    83   9e-15 
ref|YP_116958.1|  putative RNA pseudouridylate synthase [Noc...    83   9e-15 
emb|CAG10524.1|  unnamed protein product [Tetraodon nigrovir...    83   9e-15 
ref|NP_608079.1|  hypothetical protein spyM18_2124 [Streptoc...    83   9e-15 
ref|ZP_01100862.1|  RNA pseudouridine synthase family protei...    83   9e-15 
ref|YP_983305.1|  pseudouridine synthase, RluA family [Polar...    83   9e-15 
ref|ZP_01002756.1|  ribosomal large subunit pseudouridine sy...    83   9e-15 
ref|YP_061074.1|  Ribosomal large subunit pseudouridine synt...    83   9e-15 
gb|EAI61485.1|  unknown [environmental sequence]                   83   1e-14 
gb|EAH88029.1|  unknown [environmental sequence]                   83   1e-14 
gb|EAH81894.1|  unknown [environmental sequence]                   83   1e-14 
gb|EAB95008.1|  unknown [environmental sequence]                   83   1e-14 
gb|EAB75427.1|  unknown [environmental sequence]                   83   1e-14 
emb|CAL54491.1|  RNA pseudouridylate synthases (ISS) [Ostreo...    83   1e-14 
emb|CAL57772.1|  Pseudouridine synthase, RluD (ISS) [Ostreoc...    83   1e-14 
ref|ZP_01426465.1|  pseudouridine synthase [Herpetosiphon au...    83   1e-14 
ref|NP_971690.1|  ribosomal large subunit pseudouridine synt...    83   1e-14 
ref|ZP_01052920.1|  ribosomal large subunit pseudouridine sy...    83   1e-14 
ref|ZP_01050699.1|  ribosomal large subunit pseudouridine sy...    83   1e-14 
ref|ZP_00950788.1|  ribosomal large subunit pseudouridine sy...    83   1e-14 
ref|YP_680342.1|  ribosomal pseudouridine synthase C, large ...    83   1e-14 
gb|EAJ57164.1|  unknown [environmental sequence]                   82   2e-14 
gb|EAI24770.1|  unknown [environmental sequence]                   82   2e-14 
gb|EAF48202.1|  unknown [environmental sequence]                   82   2e-14 
gb|EAB23352.1|  unknown [environmental sequence]                   82   2e-14 
ref|ZP_01668333.1|  pseudouridine synthase, RluA family [Ana...    82   2e-14 
gb|EAT82519.1|  hypothetical protein SNOG_10184 [Phaeosphaer...    82   2e-14 
ref|YP_301665.1|  putative pseudouridylate synthase [Staphyl...    82   2e-14 
ref|ZP_01166755.1|  hypothetical protein MED92_04904 [Oceano...    82   2e-14 
ref|ZP_01015925.1|  ribosomal large subunit pseudouridine sy...    82   2e-14 
ref|YP_830116.1|  pseudouridine synthase [Arthrobacter sp. F...    82   2e-14 
gb|EAI85104.1|  unknown [environmental sequence]                   82   2e-14 
gb|EAC10512.1|  unknown [environmental sequence]                   82   2e-14 
ref|ZP_01251501.1|  ribosomal large subunit pseudouridine sy...    82   2e-14 
ref|YP_198987.1|  pseudouridylate synthase [Xanthomonas oryz...    82   2e-14 
ref|YP_199641.1|  pseudouridylate synthase [Xanthomonas oryz...    82   2e-14 
ref|XP_500379.1|  hypothetical protein [Yarrowia lipolytica]...    82   2e-14 
ref|NP_879332.1|  ribosomal large subunit pseudouridine synt...    82   2e-14 
ref|ZP_01312231.1|  Pseudouridine synthase, RluD [Desulfurom...    82   2e-14 
ref|XP_758324.1|  hypothetical protein UM02177.1 [Ustilago m...    82   2e-14 
ref|YP_817572.1|  Pseudouridylate synthase, 23S RNA-specific...    82   2e-14 
gb|EAH13339.1|  unknown [environmental sequence]                   82   3e-14 
gb|EAG93311.1|  unknown [environmental sequence]                   82   3e-14 
gb|EAA87387.1|  unknown [environmental sequence]                   82   3e-14 
gb|EAE08743.1|  unknown [environmental sequence]                   82   3e-14 
ref|YP_975920.1|  putative psedouridine synthase [Neisseria ...    82   3e-14 
ref|ZP_01442535.1|  ribosomal large subunit pseudouridine sy...    82   3e-14 
gb|AAV29673.1|  NT02FT1763 [synthetic construct]                   82   3e-14 
ref|NP_604269.1|  Ribosomal large subunit pseudouridine synt...    82   3e-14 
ref|YP_514429.1|  ribosomal large subunit pseudouridine synt...    82   3e-14 
ref|YP_449349.1|  pseudouridylate synthase [Xanthomonas oryz...    82   3e-14 
ref|YP_169130.1|  ribosomal large subunit pseudouridine synt...    82   3e-14 
ref|NP_968224.1|  Pseudouridine synthase Rlu family protein ...    82   3e-14 
ref|NP_906661.1|  PUTATIVE RIBOSOMAL PSEUDOURIDINE SYNTHASE ...    82   3e-14 
ref|NP_440308.1|  hypothetical protein slr1592 [Synechocysti...    82   3e-14 
ref|YP_579551.1|  Pseudouridine synthase, RluD [Psychrobacte...    82   3e-14 
gb|EAK53233.1|  unknown [environmental sequence]                   81   3e-14 
gb|EAJ45485.1|  unknown [environmental sequence]                   81   3e-14 
gb|EAJ24941.1|  unknown [environmental sequence]                   81   3e-14 
gb|EAI40454.1|  unknown [environmental sequence]                   81   3e-14 
gb|EAI29259.1|  unknown [environmental sequence]                   81   3e-14 
gb|EAB67445.1|  unknown [environmental sequence]                   81   3e-14 
ref|ZP_01389983.1|  Pseudouridine synthase, RluD [Geobacter ...    81   3e-14 
ref|NP_767114.1|  hypothetical protein blr0474 [Bradyrhizobi...    81   3e-14 
ref|YP_865307.1|  pseudouridine synthase [Magnetococcus sp. ...    81   3e-14 
ref|ZP_00144336.1|  Ribosomal large subunit pseudouridine sy...    81   3e-14 
gb|EAJ38298.1|  unknown [environmental sequence]                   81   4e-14 
gb|EAJ28241.1|  unknown [environmental sequence]                   81   4e-14 
gb|EAC52556.1|  unknown [environmental sequence]                   81   4e-14 
gb|EAB07520.1|  unknown [environmental sequence]                   81   4e-14 
gb|EAA82265.1|  unknown [environmental sequence]                   81   4e-14 
ref|ZP_01688199.1|  ribosomal large subunit pseudouridine sy...    81   4e-14 
ref|ZP_01354664.1|  Pseudouridine synthase [Clostridium phyt...    81   4e-14 
ref|YP_138751.1|  ribosomal large subunit pseudouridine synt...    81   4e-14 
ref|NP_001039205.1|  RNA pseudouridylate synthase domain con...    81   4e-14 
ref|NP_940580.1|  hypothetical protein DIP2277 [Corynebacter...    81   4e-14 
ref|ZP_01168154.1|  RluA protein [Oceanospirillum sp. MED92]...    81   4e-14 
gb|EAI78831.1|  unknown [environmental sequence]                   80   6e-14 
gb|EAF81413.1|  unknown [environmental sequence]                   80   6e-14 
gb|EAB63769.1|  unknown [environmental sequence]                   80   6e-14 
gb|EAB57524.1|  unknown [environmental sequence]                   80   6e-14 
ref|ZP_01594498.1|  pseudouridine synthase, RluA family [Geo...    80   6e-14 
ref|YP_411760.1|  Pseudouridine synthase, RluD [Nitrosospira...    80   6e-14 
ref|NP_964680.1|  hypothetical protein LJ0825 [Lactobacillus...    80   6e-14 
ref|ZP_01190839.1|  Pseudouridine synthase [Mycobacterium fl...    80   6e-14 
ref|YP_819769.1|  Pseudouridylate synthase, 23S RNA-specific...    80   6e-14 
gb|EAK07760.1|  unknown [environmental sequence]                   80   7e-14 
gb|EAG72712.1|  unknown [environmental sequence]                   80   7e-14 
gb|EAE55297.1|  unknown [environmental sequence]                   80   7e-14 
emb|CAL96989.1|  ribosomal large subunit pseudouridine synth...    80   7e-14 
ref|XP_001311733.1|  RNA pseudouridylate synthase family pro...    80   7e-14 
ref|ZP_01576543.1|  pseudouridine synthase [Clostridium cell...    80   7e-14 
ref|XP_001231937.1|  PREDICTED: hypothetical protein [Gallus...    80   7e-14 
ref|YP_799175.1|  Pseudouridylate synthase, 23S RNA-specific...    80   7e-14 
ref|YP_627083.1|  pseudouridine synthase D [Helicobacter pyl...    80   7e-14 
ref|XP_362534.1|  hypothetical protein MG08117.4 [Magnaporth...    80   7e-14 
ref|YP_364155.1|  pseudouridylate synthase [Xanthomonas camp...    80   7e-14 
ref|YP_160122.1|  ribosomal large subunit pseudouridine synt...    80   7e-14 
ref|YP_007130.1|  putative ribosomal large subunit pseudouri...    80   7e-14 
pir||B69883  conserved hypothetical protein ylyB - Bacillus ...    80   7e-14 
ref|NP_188575.1|  RNA binding / pseudouridine synthase/ pseu...    80   7e-14 
gb|EAK00189.1|  unknown [environmental sequence]                   80   1e-13 
gb|EAJ70183.1|  unknown [environmental sequence]                   80   1e-13 
gb|EAJ44206.1|  unknown [environmental sequence]                   80   1e-13 
gb|EAC96973.1|  unknown [environmental sequence]                   80   1e-13 
gb|EAF29624.1|  unknown [environmental sequence]                   80   1e-13 
gb|EAB66142.1|  unknown [environmental sequence]                   80   1e-13 
ref|XP_001314542.1|  ribosomal large subunit pseudouridine s...    80   1e-13 
ref|YP_812598.1|  Pseudouridylate synthase, 23S RNA-specific...    80   1e-13 
ref|YP_618676.1|  Pseudouridylate synthase [Lactobacillus de...    80   1e-13 
ref|ZP_01304062.1|  pseudouridylate synthase [Sphingomonas s...    80   1e-13 
ref|ZP_01247373.1|  Pseudouridine synthase [Flavobacterium j...    80   1e-13 
ref|NP_852991.1|  RluA [Mycoplasma gallisepticum R] >gi|3154...    80   1e-13 
ref|NP_266520.1|  pseudouridine synthase [Lactococcus lactis...    80   1e-13 
ref|NP_642429.1|  pseudouridylate synthase [Xanthomonas axon...    80   1e-13 
ref|NP_764252.1|  hypothetical protein SE0697 [Staphylococcu...    80   1e-13 
ref|XP_382806.1|  hypothetical protein FG02630.1 [Gibberella...    80   1e-13 
gb|EAI23709.1|  unknown [environmental sequence]                   79   1e-13 
gb|EAH19302.1|  unknown [environmental sequence]                   79   1e-13 
gb|EAC41712.1|  unknown [environmental sequence]                   79   1e-13 
gb|EAY42964.1|  pseudouridine synthase, RluA family [Bacillu...    79   1e-13 
ref|ZP_01449065.1|  putative Pseudouridine synthase, Rlu [al...    79   1e-13 
ref|YP_682115.1|  ribosomal large subunit pseudouridine synt...    79   1e-13 
ref|YP_952456.1|  pseudouridine synthase [Mycobacterium vanb...    79   1e-13 
ref|XP_792641.1|  PREDICTED: similar to RNA pseudouridylate ...    79   1e-13 
ref|NP_968661.1|  ribosomal large subunit pseudouridine synt...    79   1e-13 
ref|YP_619356.1|  Pseudouridylate synthase [Lactobacillus de...    79   1e-13 
gb|EAJ04505.1|  unknown [environmental sequence]                   79   2e-13 
gb|EAH62910.1|  unknown [environmental sequence]                   79   2e-13 
gb|EAC59324.1|  unknown [environmental sequence]                   79   2e-13 
gb|EAE40693.1|  unknown [environmental sequence]                   79   2e-13 
ref|ZP_01527340.1|  pseudouridine synthase [Pseudomonas mend...    79   2e-13 
ref|YP_860167.1|  RNA pseudouridylate synthase [Gramella for...    79   2e-13 
ref|ZP_01223792.1|  Predicted pseudouridylate synthase, Rlu ...    79   2e-13 
ref|NP_283249.1|  psedouridine synthase [Neisseria meningiti...    79   2e-13 
ref|XP_654854.1|  RNA pseudouridylate synthase [Entamoeba hi...    79   2e-13 
ref|YP_679623.1|  pseudouridylate synthase [Cytophaga hutchi...    79   2e-13 
gb|EAJ84971.1|  unknown [environmental sequence]                   79   2e-13 
gb|EAD34692.1|  unknown [environmental sequence]                   79   2e-13 
ref|XP_973027.1|  PREDICTED: similar to CG31719-PA, isoform ...    79   2e-13 
ref|NP_860266.1|  hypothetical protein HH0735 [Helicobacter ...    79   2e-13 
ref|NP_337928.1|  RNA pseudouridylate synthase family protei...    79   2e-13 
ref|NP_275010.1|  hypothetical protein NMB2018 [Neisseria me...    79   2e-13 
ref|YP_201711.1|  pseudouridylate synthase [Xanthomonas oryz...    79   2e-13 
ref|NP_923129.1|  probable pseudouridine synthase [Gloeobact...    79   2e-13 
ref|NP_856973.1|  hypothetical protein Mb3328c [Mycobacteriu...    79   2e-13 
ref|NP_217817.1|  hypothetical protein Rv3300c [Mycobacteriu...    79   2e-13 
ref|ZP_01112748.1|  probable pseudouridine synthase [Reineke...    79   2e-13 
ref|ZP_00876647.1|  COG0564: Pseudouridylate synthases, 23S ...    79   2e-13 
ref|XP_727467.1|  hypothetical protein PY00873 [Plasmodium y...    79   2e-13 
gb|EAI45661.1|  unknown [environmental sequence]                   78   3e-13 
gb|EAG48606.1|  unknown [environmental sequence]                   78   3e-13 
gb|EAC25157.1|  unknown [environmental sequence]                   78   3e-13 
gb|EAB36127.1|  unknown [environmental sequence]                   78   3e-13 
gb|EAA82941.1|  unknown [environmental sequence]                   78   3e-13 
ref|ZP_01541168.1|  pseudouridine synthase Rlu family protei...    78   3e-13 
ref|YP_799659.1|  Pseudouridylate synthase, 23S RNA-specific...    78   3e-13 
ref|YP_392963.1|  Pseudouridine synthase [Thiomicrospira den...    78   3e-13 
ref|YP_391597.1|  Pseudouridine synthase RluA-like [Thiomicr...    78   3e-13 
ref|NP_969184.1|  putative RNA pseudouridylate synthase [Bde...    78   3e-13 
ref|NP_223040.1|  hypothetical protein jhp0321 [Helicobacter...    78   3e-13 
ref|ZP_01143473.1|  ribosomal large subunit pseudouridine sy...    78   3e-13 
ref|ZP_01118468.1|  pseudouridine synthase Rlu family protei...    78   3e-13 
ref|ZP_00974529.1|  COG0564: Pseudouridylate synthases, 23S ...    78   3e-13 
ref|ZP_00366747.1|  ribosomal large subunit pseudouridine sy...    78   3e-13 
gb|EAH49031.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAG97775.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAF15152.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAA84481.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAE22996.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAD96068.1|  unknown [environmental sequence]                   78   4e-13 
ref|ZP_01643310.1|  pseudouridine synthase, RluA family [Ste...    78   4e-13 
ref|ZP_01625419.1|  ribosomal large subunit pseudouridine sy...    78   4e-13 
emb|CAL56525.1|  COG0564: Pseudouridylate synthases, 23S RNA...    78   4e-13 
ref|YP_545431.1|  Pseudouridine synthase, RluD [Methylobacil...    78   4e-13 
ref|NP_637448.1|  pseudouridylate synthase [Xanthomonas camp...    78   4e-13 
ref|ZP_00505036.1|  Pseudouridine synthase, RluD [Clostridiu...    78   4e-13 
ref|ZP_00134593.1|  COG0564: Pseudouridylate synthases, 23S ...    78   4e-13 
gb|EAJ93913.1|  unknown [environmental sequence]                   77   5e-13 
gb|EAI70926.1|  unknown [environmental sequence]                   77   5e-13 
gb|EAD59948.1|  unknown [environmental sequence]                   77   5e-13 
gb|EAG43092.1|  unknown [environmental sequence]                   77   5e-13 
ref|ZP_01643257.1|  pseudouridine synthase [Stenotrophomonas...    77   5e-13 
emb|CAL55846.1|  probable pseudouridine synthase (ISS) [Ostr...    77   5e-13 
ref|YP_997368.1|  pseudouridine synthase [Verminephrobacter ...    77   5e-13 
ref|YP_664746.1|  putative ribosomal pseudouridine synthase ...    77   5e-13 
ref|YP_466583.1|  Pseudouridine synthase, RluD [Anaeromyxoba...    77   5e-13 
emb|CAD97486.1|  pseudouridine synthase [Paramecium tetraure...    77   5e-13 
ref|NP_190794.2|  RNA binding / pseudouridine synthase/ pseu...    77   5e-13 
ref|XP_675809.1|  ribosomal large subunit pseudouridylate sy...    77   5e-13 
ref|NP_082316.1|  RNA pseudouridylate synthase domain contai...    77   5e-13 
ref|ZP_01142456.1|  Pseudouridine synthase, RluD [Geobacter ...    77   5e-13 
ref|YP_815152.1|  Pseudouridylate synthase, 23S RNA-specific...    77   5e-13 
gb|EAK45877.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAB54607.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAB26349.1|  unknown [environmental sequence]                   77   6e-13 
ref|YP_903343.1|  pseudouridine synthase, RluA family [Candi...    77   6e-13 
gb|AAN64577.1|  ribosomal large subunit pseudouridine syntha...    77   6e-13 
ref|YP_549718.1|  pseudouridine synthase [Polaromonas sp. JS...    77   6e-13 
ref|ZP_00975579.1|  COG0564: Pseudouridylate synthases, 23S ...    77   6e-13 
ref|XP_711730.1|  hypothetical protein CaO19.2788 [Candida a...    77   6e-13 
gb|EAK79032.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAJ09987.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAH63868.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAG68220.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAD96687.1|  unknown [environmental sequence]                   77   8e-13 
ref|ZP_01539436.1|  pseudouridine synthase [Shewanella woody...    77   8e-13 
ref|ZP_01451281.1|  RNA pseudouridine synthase family protei...    77   8e-13 
ref|ZP_01377750.1|  hypothetical protein Cjejd_01001585 [Cam...    77   8e-13 
ref|YP_338279.1|  ribosomal large subunit pseudouridine synt...    77   8e-13 
ref|YP_188179.1|  ribosomal large subunit pseudouridine synt...    77   8e-13 
ref|YP_285222.1|  Pseudouridine synthase, RluD [Dechloromona...    77   8e-13 
ref|NP_739403.1|  hypothetical protein CE2793 [Corynebacteri...    77   8e-13 
ref|ZP_01093981.1|  putative 23S rRNA pseudouridine synthase...    77   8e-13 
ref|XP_711752.1|  hypothetical protein CaO19.10304 [Candida ...    77   8e-13 
gb|EAI89912.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAI89897.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAI08981.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAH12820.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAG83290.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAG12145.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAF30310.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAE53677.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAA87829.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAU87719.1|  predicted protein [Coprinopsis cinerea okaya...    76   1e-12 
ref|ZP_01298408.1|  hypothetical protein CburD_01001734 [Cox...    76   1e-12 
ref|ZP_01296237.1|  hypothetical protein PaerP_01001734 [Pse...    76   1e-12 
gb|AAG24942.1|AF128845_1  RluD [Sinorhizobium meliloti]            76   1e-12 
ref|ZP_00837053.1|  Pseudouridine synthase RluA-like [Shewan...    76   1e-12 
gb|EAK04394.1|  unknown [environmental sequence]                   76   1e-12 
ref|YP_791196.1|  putative pseudouridylate synthase [Pseudom...    76   1e-12 
ref|YP_942940.1|  pseudouridine synthase [Psychromonas ingra...    76   1e-12 
ref|YP_204403.1|  tRNA pseudouridine synthase A [Vibrio fisc...    76   1e-12 
ref|YP_433477.1|  Pseudouridylate synthases, 23S RNA-specifi...    76   1e-12 
ref|ZP_01107698.1|  putative ribosomal large subunit pseudou...    76   1e-12 
ref|ZP_01071277.1|  ribosomal pseudouridine synthase [Campyl...    76   1e-12 
ref|NP_282427.1|  putative ribosomal pseudouridine synthase ...    76   1e-12 
gb|EAK67889.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAJ46769.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAH57375.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAD43473.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAG23244.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAC61005.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAF53049.1|  unknown [environmental sequence]                   75   2e-12 
ref|YP_391974.1|  Pseudouridine synthase [Thiomicrospira cru...    75   2e-12 
ref|YP_386616.1|  RNA-binding S4 [Desulfovibrio desulfurican...    75   2e-12 
ref|NP_228748.1|  ribosomal large subunit pseudouridine synt...    75   2e-12 
ref|YP_301867.1|  putative RNA pseudouridylate synthase [Sta...    75   2e-12 
ref|NP_625900.1|  ribosomal pseudouridine synthase [Streptom...    75   2e-12 
ref|ZP_01077507.1|  RNA pseudouridine synthase family protei...    75   2e-12 
ref|ZP_00991692.1|  pseudouridine synthase Rlu family protei...    75   2e-12 
ref|YP_732420.1|  pseudouridine synthase Rlu family protein,...    75   2e-12 
ref|YP_749480.1|  pseudouridine synthase [Shewanella frigidi...    75   2e-12 
ref|YP_748793.1|  pseudouridine synthase Rlu family protein,...    75   2e-12 
gb|EAJ79782.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAI87031.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAC55125.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAB34763.1|  unknown [environmental sequence]                   75   2e-12 
ref|YP_664476.1|  pseudouridine synthase [Helicobacter acino...    75   2e-12 
ref|NP_860314.1|  ribosomal pseudouridine synthase [Helicoba...    75   2e-12 

>ref|ZP_00923868.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Escherichia
           coli 101-1]
          Length = 230

 Score =  451 bits (1160), Expect = e-125
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219



>ref|NP_414600.1| pseudouridine synthase for 23S rRNA (position 746) and
           tRNAphe(position 32) [Escherichia coli K12]
 ref|NP_835794.1| hypothetical protein S0055 [Shigella flexneri 2a str. 2457T]
 ref|YP_309094.1| hypothetical protein SSON_0064 [Shigella sonnei Ss046]
 ref|ZP_00702427.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Escherichia
           coli E24377A]
 ref|ZP_00704347.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Escherichia
           coli HS]
 ref|ZP_00709652.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Escherichia
           coli B171]
 ref|ZP_00718675.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Escherichia
           coli E110019]
 ref|ZP_00721004.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Escherichia
           coli F11]
 ref|ZP_00727781.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Escherichia
           coli E22]
 ref|ZP_00734356.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Escherichia
           coli 53638]
 ref|YP_406609.1| hypothetical protein SBO_0045 [Shigella boydii Sb227]
 ref|YP_401809.1| hypothetical protein SDY_0082 [Shigella dysenteriae Sd197]
 ref|AP_000722.1| pseudouridine synthase for 23S rRNA (position 746) and
           tRNAphe(position 32) [Escherichia coli W3110]
 ref|YP_667998.1| ribosomal large subunit pseudouridine synthase A [Escherichia coli
           536]
 ref|YP_687642.1| hypothetical protein SFV_0050 [Shigella flexneri 5 str. 8401]
 sp|P0AA37|RLUA_ECOLI Ribosomal large subunit pseudouridine synthase A (rRNA-uridine
           isomerase A) (rRNA pseudouridylate synthase A)
 sp|P0AA38|RLUA_SHIFL Ribosomal large subunit pseudouridine synthase A (rRNA-uridine
           isomerase A) (rRNA pseudouridylate synthase A)
 gb|AAC73169.1| pseudouridine synthase for 23S rRNA (position 746) and
           tRNAphe(position 32) [Escherichia coli K12]
 gb|AAP15599.1| hypothetical protein S_0055 [Shigella flexneri 2a str. 2457T]
 gb|AAZ86859.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gb|ABB60320.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gb|ABB64781.1| conserved hypothetical protein [Shigella boydii Sb227]
 dbj|BAE76039.1| pseudouridine synthase for 23S rRNA (position 746) and
           tRNAphe(position 32) [Escherichia coli W3110]
 gb|ABG68099.1| ribosomal large subunit pseudouridine synthase A [Escherichia coli
           536]
 gb|ABF02337.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gb|EAY46547.1| Pseudouridylate synthase [Escherichia coli B]
          Length = 219

 Score =  451 bits (1160), Expect = e-125
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219



>ref|NP_752021.1| Ribosomal large subunit pseudouridine synthase A [Escherichia coli
           CFT073]
 sp|Q8FL93|RLUA_ECOL6 Ribosomal large subunit pseudouridine synthase A (rRNA-uridine
           isomerase A) (rRNA pseudouridylate synthase A)
 gb|AAN78565.1|AE016755_65 Ribosomal large subunit pseudouridine synthase A [Escherichia coli
           CFT073]
          Length = 219

 Score =  451 bits (1159), Expect = e-125
 Identities = 218/219 (99%), Positives = 219/219 (100%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLV+LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQEPWLVVLYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219



>ref|ZP_00715671.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Escherichia
           coli B7A]
          Length = 219

 Score =  450 bits (1157), Expect = e-125
 Identities = 218/219 (99%), Positives = 219/219 (100%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML+LGHPILGDRF
Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLSLGHPILGDRF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219



>ref|YP_539104.1| ribosomal large subunit pseudouridine synthase A [Escherichia coli
           UTI89]
 ref|YP_851259.1| ribosomal large subunit pseudouridine synthase A [Escherichia coli
           APEC O1]
 gb|ABE05573.1| ribosomal large subunit pseudouridine synthase A [Escherichia coli
           UTI89]
 gb|ABI99544.1| ribosomal large subunit pseudouridine synthase A [Escherichia coli
           APEC O1]
          Length = 219

 Score =  449 bits (1156), Expect = e-125
 Identities = 217/219 (99%), Positives = 219/219 (100%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQ+PWLV+LYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQDPWLVVLYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219



>ref|ZP_00695824.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Shigella
           boydii BS512]
          Length = 219

 Score =  449 bits (1154), Expect = e-125
 Identities = 218/219 (99%), Positives = 218/219 (99%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHP PAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPFPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219



>ref|NP_285754.1| hypothetical protein Z0066 [Escherichia coli O157:H7 EDL933]
 ref|NP_308089.1| hypothetical protein ECs0062 [Escherichia coli O157:H7 str. Sakai]
 sp|Q8XA10|RLUA_ECO57 Ribosomal large subunit pseudouridine synthase A (rRNA-uridine
           isomerase A) (rRNA pseudouridylate synthase A)
 gb|AAG54362.1|AE005182_11 orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
 dbj|BAB33485.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
          Length = 219

 Score =  447 bits (1149), Expect = e-124
 Identities = 217/219 (99%), Positives = 217/219 (99%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFRER PKKQYV RVWGHPSPAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFRERVPKKQYVTRVWGHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219



>ref|NP_459100.1| 23S rRNA pseudouridylate 746 synthase [Salmonella typhimurium LT2]
 sp|Q8ZRV9|RLUA_SALTY Ribosomal large subunit pseudouridine synthase A (rRNA-uridine
           isomerase A) (rRNA pseudouridylate synthase A)
 gb|AAL19059.1| 23S rRNA pseudouridylate 746 synthase [Salmonella typhimurium LT2]
          Length = 219

 Score =  434 bits (1117), Expect = e-120
 Identities = 209/219 (95%), Positives = 214/219 (97%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLVILYQD+HIMVVNKPSGLLSVPGRLE HKDS+MTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEY VVE+AADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
Sbjct: 121 NRPKQKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEA ++APRL LHAEMLTITHPAYGNSMTFK PADF
Sbjct: 181 YASPEALSLAPRLQLHAEMLTITHPAYGNSMTFKVPADF 219



>ref|NP_454707.1| ribosomal large subunit pseudouridine synthase A [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 ref|NP_803982.1| ribosomal large subunit pseudouridine synthase A [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
 sp|Q8Z9J5|RLUA_SALTI Ribosomal large subunit pseudouridine synthase A (rRNA-uridine
           isomerase A) (rRNA pseudouridylate synthase A)
 pir||AC0514 pseudouridylate synthase (EC 4.2.1.70) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 emb|CAD01251.1| ribosomal large subunit pseudouridine synthase A [Salmonella
           enterica subsp. enterica serovar Typhi]
 gb|AAO67831.1| ribosomal large subunit pseudouridine synthase A [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 219

 Score =  433 bits (1113), Expect = e-120
 Identities = 208/219 (94%), Positives = 214/219 (97%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLVILYQD+HIMVVNKPSGLLSVPGRLE HKDS+MTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEY VVE+AADNTARVVLKPITGRSHQLRVHMLALGHPILGD+F
Sbjct: 121 NRPKQKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGRSHQLRVHMLALGHPILGDQF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEA ++APRL LHAEMLTITHPAYGNSMTFK PADF
Sbjct: 181 YASPEALSLAPRLQLHAEMLTITHPAYGNSMTFKVPADF 219



>ref|YP_215077.1| 23S rRNA pseudouridylate 746 synthase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gb|AAX63996.1| 23S rRNA pseudouridylate 746 synthase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 219

 Score =  432 bits (1111), Expect = e-120
 Identities = 208/219 (94%), Positives = 213/219 (97%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLVILYQD+HIMVVNKPSGLLSVPGRLE HKDS+MTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEY VVE+AADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
Sbjct: 121 NRPKQKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEA ++APRL LHAEMLTITHPAYG SMTFK PADF
Sbjct: 181 YASPEALSLAPRLQLHAEMLTITHPAYGTSMTFKVPADF 219



>ref|YP_149441.1| ribosomal large subunit pseudouridine synthase A [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gb|AAV76129.1| ribosomal large subunit pseudouridine synthase A [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
          Length = 219

 Score =  429 bits (1103), Expect = e-119
 Identities = 207/219 (94%), Positives = 212/219 (96%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLVILYQD+HIMVVNKPSGLLSVPGRLE HKDS+MTRIQRDYPQAESV
Sbjct: 1   MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQAESV 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVW HPSPAEGLVDLPLICDWP
Sbjct: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWRHPSPAEGLVDLPLICDWP 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEY VVE+AADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
Sbjct: 121 NRPKQKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YASPEA ++APRL LHAEMLTITHPAYG SMTFK PADF
Sbjct: 181 YASPEALSLAPRLQLHAEMLTITHPAYGTSMTFKVPADF 219



>pdb|2I82|A Chain A, Crystal Structure Of Pseudouridine Synthase Rlua: Indirect
           Sequence Readout Through Protein-Induced Rna Structure
 pdb|2I82|B Chain B, Crystal Structure Of Pseudouridine Synthase Rlua: Indirect
           Sequence Readout Through Protein-Induced Rna Structure
 pdb|2I82|C Chain C, Crystal Structure Of Pseudouridine Synthase Rlua: Indirect
           Sequence Readout Through Protein-Induced Rna Structure
 pdb|2I82|D Chain D, Crystal Structure Of Pseudouridine Synthase Rlua: Indirect
           Sequence Readout Through Protein-Induced Rna Structure
          Length = 217

 Score =  429 bits (1102), Expect = e-119
 Identities = 209/216 (96%), Positives = 209/216 (96%)

Query: 4   ENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRL 63
           ENYNPPQEPWLVILYQDDHI VVNKPSGLLSVPGRLEEHKDSV TRIQRDYPQAESVHRL
Sbjct: 2   ENYNPPQEPWLVILYQDDHIXVVNKPSGLLSVPGRLEEHKDSVXTRIQRDYPQAESVHRL 61

Query: 64  DMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 123
           D ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP
Sbjct: 62  DXATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRP 121

Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183
           KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVH LALGHPILGDRFYAS
Sbjct: 122 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHXLALGHPILGDRFYAS 181

Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           PEARA APRLLLHAE LTITHPAYGNS TFKAPADF
Sbjct: 182 PEARAXAPRLLLHAEXLTITHPAYGNSXTFKAPADF 217



>ref|ZP_01591262.1| pseudouridine synthase [Enterobacter sp. 638]
 gb|EAV82483.1| pseudouridine synthase [Enterobacter sp. 638]
          Length = 217

 Score =  415 bits (1066), Expect = e-114
 Identities = 197/217 (90%), Positives = 207/217 (95%)

Query: 3   MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHR 62
           ME YNPP EPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTR+QRDYPQAESVHR
Sbjct: 1   METYNPPMEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRVQRDYPQAESVHR 60

Query: 63  LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122
           LDMATSGVIVVALTKAAERELKRQFR+REPKKQY+AR+WGHP  AEGLVDLPLICDWPNR
Sbjct: 61  LDMATSGVIVVALTKAAERELKRQFRDREPKKQYIARIWGHPEKAEGLVDLPLICDWPNR 120

Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182
           PKQKVC+ETGK AQTEYEV+EYA DNTAR++LKPITGRSHQLRVHMLALGHPILGDRFYA
Sbjct: 121 PKQKVCFETGKAAQTEYEVLEYAPDNTARILLKPITGRSHQLRVHMLALGHPILGDRFYA 180

Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           +PEA AMAPRL LHAEMLTITHPA+G SMTFK PADF
Sbjct: 181 TPEALAMAPRLQLHAEMLTITHPAFGTSMTFKTPADF 217



>ref|NP_706012.1| hypothetical protein SF0053 [Shigella flexneri 2a str. 301]
 gb|AAN41719.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 228

 Score =  388 bits (997), Expect = e-106
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV
Sbjct: 20  MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 79

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP
Sbjct: 80  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 139

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF
Sbjct: 140 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 199

Query: 181 YASPEARA 188
           YASPEARA
Sbjct: 200 YASPEARA 207



>ref|ZP_00823779.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Yersinia
           bercovieri ATCC 43970]
          Length = 217

 Score =  355 bits (911), Expect = 9e-97
 Identities = 172/217 (79%), Positives = 185/217 (85%)

Query: 3   MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHR 62
           ME YNPP++PWL ILYQD HIMVVNKPSGLLSVPGR  EHKDSVMTRIQ DYP AESVHR
Sbjct: 1   MEPYNPPRDPWLHILYQDQHIMVVNKPSGLLSVPGRAPEHKDSVMTRIQADYPTAESVHR 60

Query: 63  LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122
           LDMATSGVI+VALTKAAERELKRQFREREPKK Y+ARVWGH +  EGL+DLPLICDWPNR
Sbjct: 61  LDMATSGVIIVALTKAAERELKRQFREREPKKTYIARVWGHLAQDEGLIDLPLICDWPNR 120

Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182
           PKQKVCYETGK AQTEY+V+   AD + RV L PITGRSHQLRVHMLA+GHPILGD FYA
Sbjct: 121 PKQKVCYETGKSAQTEYQVLSRDADGSTRVKLSPITGRSHQLRVHMLAMGHPILGDGFYA 180

Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
            PEA+AMAPRL LHA+ L ITHP +   M FK  A F
Sbjct: 181 HPEAKAMAPRLQLHAQELCITHPEFSTLMHFKCEAGF 217



>ref|ZP_00825743.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Yersinia
           mollaretii ATCC 43969]
          Length = 217

 Score =  353 bits (905), Expect = 5e-96
 Identities = 170/217 (78%), Positives = 186/217 (85%)

Query: 3   MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHR 62
           ME YNPP++PWL ILYQD+HIMVVNKPSGLLSVPGR  E+KDS+MTRIQ DYP AESVHR
Sbjct: 1   MEPYNPPRDPWLHILYQDEHIMVVNKPSGLLSVPGRAPENKDSIMTRIQADYPTAESVHR 60

Query: 63  LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122
           LDMATSGVI+VALTKAAERELKRQFREREPKK Y+ARVWGH +  EGL+DLPLICDWPNR
Sbjct: 61  LDMATSGVIIVALTKAAERELKRQFREREPKKSYIARVWGHLTQDEGLIDLPLICDWPNR 120

Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182
           PKQKVCYETGK AQTEY V+   AD + RV L PITGRSHQLRVHMLA+GHPILGD FYA
Sbjct: 121 PKQKVCYETGKSAQTEYHVLSRDADGSTRVKLSPITGRSHQLRVHMLAMGHPILGDGFYA 180

Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
            PEA+AMA RL LHA+ L ITHP +G  M FK  A+F
Sbjct: 181 HPEAKAMASRLQLHAQELCITHPEFGTVMHFKCEAEF 217



>ref|YP_051942.1| ribosomal large subunit pseudouridine synthase A [Erwinia
           carotovora subsp. atroseptica SCRI1043]
 emb|CAG76752.1| ribosomal large subunit pseudouridine synthase A [Erwinia
           carotovora subsp. atroseptica SCRI1043]
          Length = 217

 Score =  352 bits (903), Expect = 8e-96
 Identities = 169/217 (77%), Positives = 184/217 (84%)

Query: 3   MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHR 62
           ME YNPP +PWL +LYQD HIMVVNKPSGLLSVPGR  EHKDSVM RIQ DYP AESVHR
Sbjct: 1   MEPYNPPTDPWLHVLYQDQHIMVVNKPSGLLSVPGRAPEHKDSVMNRIQADYPTAESVHR 60

Query: 63  LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122
           LDMATSGVI VALTKAAERELKRQFREREPKK Y+ARVWGH +  EG++DLPLICDWPNR
Sbjct: 61  LDMATSGVIAVALTKAAERELKRQFREREPKKSYLARVWGHMAQDEGVIDLPLICDWPNR 120

Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182
           PKQKVC+ETGK AQTEY+V+    D T RV L PITGRSHQLRVH+LALGHPILGD FYA
Sbjct: 121 PKQKVCFETGKSAQTEYQVLSRDDDGTTRVKLMPITGRSHQLRVHLLALGHPILGDGFYA 180

Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
            P+A+AMAPRLLLHA+ L ITHPA+   M F+  ADF
Sbjct: 181 HPDAKAMAPRLLLHAQELAITHPAFNTPMHFRCEADF 217



>ref|ZP_00831665.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Yersinia
           frederiksenii ATCC 33641]
          Length = 218

 Score =  350 bits (899), Expect = 2e-95
 Identities = 171/217 (78%), Positives = 185/217 (85%)

Query: 3   MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHR 62
           ME YNPP++PWL ILYQD+HIMVVNKPSGLLSVPGR  E+KDSVMTRIQ D+P AESVHR
Sbjct: 2   MEPYNPPRDPWLHILYQDEHIMVVNKPSGLLSVPGRAPENKDSVMTRIQADFPHAESVHR 61

Query: 63  LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122
           LDMATSGVIVVALTKAAERELKRQFREREPKK YVARVWGH +  EGL+DLPLICDWPNR
Sbjct: 62  LDMATSGVIVVALTKAAERELKRQFREREPKKSYVARVWGHLAQDEGLIDLPLICDWPNR 121

Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182
           PKQKVCYETGK +QTEY V+    D + RV L PITGRSHQLRVHMLA+GHPILGDRFYA
Sbjct: 122 PKQKVCYETGKSSQTEYLVLSRDTDGSTRVKLSPITGRSHQLRVHMLAIGHPILGDRFYA 181

Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
            PEA+AMA RL LHA+ L ITHP +G  M FK  A F
Sbjct: 182 HPEAKAMASRLQLHAQELCITHPEFGTVMHFKCEAPF 218



>ref|ZP_00832125.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Yersinia
           intermedia ATCC 29909]
          Length = 217

 Score =  347 bits (890), Expect = 3e-94
 Identities = 166/217 (76%), Positives = 185/217 (85%)

Query: 3   MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHR 62
           ME YNPP++PWL IL+QD+HIMVVNKPSGLLSVPGR  E+KDS+MTRIQ D+P AESVHR
Sbjct: 1   MEPYNPPRDPWLHILFQDEHIMVVNKPSGLLSVPGRAPENKDSIMTRIQADFPAAESVHR 60

Query: 63  LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122
           LDMATSGVI+VALTKAAERELKRQFREREPKK Y+ARVWGH +  EGL+DLPLICDWPNR
Sbjct: 61  LDMATSGVIIVALTKAAERELKRQFREREPKKSYIARVWGHLAEDEGLIDLPLICDWPNR 120

Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182
           PKQKVCYETGK AQTEY V+    D + RV L PITGRSHQLRVHMLA+GHPILGD FYA
Sbjct: 121 PKQKVCYETGKSAQTEYRVLSRDTDGSTRVKLSPITGRSHQLRVHMLAMGHPILGDGFYA 180

Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
            PEA+AMA RL LHA+ L ITHP +G +M F   A+F
Sbjct: 181 HPEAKAMASRLQLHAQELCITHPEFGTAMHFTCEAEF 217



>ref|NP_927960.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
           synthase) (uracil hydrolyase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
 emb|CAE12909.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
           synthase) (uracil hydrolyase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 216

 Score =  337 bits (865), Expect = 2e-91
 Identities = 164/217 (75%), Positives = 181/217 (83%), Gaps = 1/217 (0%)

Query: 3   MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHR 62
           ME YNPP +PWL +LYQD +I+VVNKPSGLLSVPGR  EHKDS+MTRIQ+ +P AESVHR
Sbjct: 1   MEAYNPPTDPWLHVLYQDQYIIVVNKPSGLLSVPGRAAEHKDSIMTRIQQQFPAAESVHR 60

Query: 63  LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122
           LDMATSGV+VVALTK AERELKRQFREREP+K Y+ARVWG   P  GLVDLPLICDWPNR
Sbjct: 61  LDMATSGVMVVALTKDAERELKRQFREREPEKTYIARVWGRLEPETGLVDLPLICDWPNR 120

Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182
           PKQKVC+ETGK AQTEYEV+ Y  D   R+ L PITGRSHQLRVHMLAL HPILGD+FYA
Sbjct: 121 PKQKVCFETGKSAQTEYEVLAY-EDEATRIKLSPITGRSHQLRVHMLALEHPILGDQFYA 179

Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
             +ARAMAPRL LHA+ L ITHP YG  M F+  ADF
Sbjct: 180 HQQARAMAPRLQLHAQELYITHPVYGTPMHFQCKADF 216



>ref|YP_454109.1| ribosomal large subunit pseudouridine synthase A [Sodalis
           glossinidius str. 'morsitans']
 dbj|BAE73704.1| ribosomal large subunit pseudouridine synthase A [Sodalis
           glossinidius str. 'morsitans']
          Length = 217

 Score =  333 bits (855), Expect = 3e-90
 Identities = 161/217 (74%), Positives = 183/217 (84%)

Query: 3   MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHR 62
           ME Y+PPQ PWL ILYQD HIM VNKPSGLLSVPGR  EH+DSVMTRIQ ++PQAESVHR
Sbjct: 1   MEPYHPPQMPWLHILYQDTHIMAVNKPSGLLSVPGRAPEHRDSVMTRIQANFPQAESVHR 60

Query: 63  LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122
           LDMATSGV+VVALTKAAERELKRQFREREP+K Y+A V+GHP+  EG +DLPLICDWPNR
Sbjct: 61  LDMATSGVLVVALTKAAERELKRQFREREPRKTYIASVYGHPACDEGDIDLPLICDWPNR 120

Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182
           P+QKVC+ TGK A T YEV+    D +ARV L P+TGRSHQLRVH+ +LGHPILGD FYA
Sbjct: 121 PRQKVCFGTGKAALTHYEVLSRDPDGSARVRLTPMTGRSHQLRVHIQSLGHPILGDGFYA 180

Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           +PEA+AMAPRLLLHA+ L ITHP YG+ + F   ADF
Sbjct: 181 TPEAKAMAPRLLLHAQTLAITHPQYGSPIHFHCEADF 217



>ref|NP_404140.1| ribosomal large subunit pseudouridine synthase A [Yersinia pestis
           CO92]
 ref|NP_670975.1| hypothetical protein y3678 [Yersinia pestis KIM]
 ref|NP_994953.1| ribosomal large subunit pseudouridine synthase A [Yersinia pestis
           biovar Microtus str. 91001]
 ref|YP_069180.1| 23S rRNA pseudouridylate 746 synthase [Yersinia pseudotuberculosis
           IP 32953]
 ref|ZP_00796756.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Yersinia
           pestis Angola]
 ref|ZP_01174829.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Yersinia
           pestis biovar Orientalis str. IP275]
 ref|YP_653997.1| ribosomal large subunit pseudouridine synthase A [Yersinia pestis
           Antiqua]
 ref|YP_646303.1| ribosomal large subunit pseudouridine synthase A [Yersinia pestis
           Nepal516]
 ref|ZP_01497944.1| hypothetical protein YpseI_02003117 [Yersinia pseudotuberculosis IP
           31758]
 sp|Q8ZIK1|RLUA_YERPE Ribosomal large subunit pseudouridine synthase A (rRNA-uridine
           isomerase A) (rRNA pseudouridylate synthase A)
 gb|AAM87226.1|AE013971_2 hypothetical protein y3678 [Yersinia pestis KIM]
 gb|AAS63830.1| ribosomal large subunit pseudouridine synthase A [Yersinia pestis
           biovar Microtus str. 91001]
 emb|CAH19878.1| 23S rRNA pseudouridylate 746 synthase [Yersinia pseudotuberculosis
           IP 32953]
 gb|ABG16703.1| ribosomal large subunit pseudouridine synthase A [Yersinia pestis
           Nepal516]
 gb|ABG16052.1| ribosomal large subunit pseudouridine synthase A [Yersinia pestis
           Antiqua]
 emb|CAL19177.1| ribosomal large subunit pseudouridine synthase A [Yersinia pestis
           CO92]
          Length = 206

 Score =  330 bits (847), Expect = 2e-89
 Identities = 159/206 (77%), Positives = 176/206 (85%)

Query: 14  LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVV 73
           +++LYQD HIMVVNKPSGLLSVPGR  E+KDSVMTR+Q D+P AESVHRLDMATSGVIVV
Sbjct: 1   MIVLYQDKHIMVVNKPSGLLSVPGRAPENKDSVMTRVQNDFPTAESVHRLDMATSGVIVV 60

Query: 74  ALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGK 133
           ALTKAAERELKRQFREREPKK Y+ARVWGH +  EGL+DLPLICDWPNRPKQKVCYETGK
Sbjct: 61  ALTKAAERELKRQFREREPKKTYIARVWGHLAQDEGLIDLPLICDWPNRPKQKVCYETGK 120

Query: 134 PAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRL 193
            AQTEY+V+    D + RV L PITGRSHQLRVHMLA+GHPILGD FYA PEA+AMA RL
Sbjct: 121 SAQTEYQVISRDDDGSTRVKLSPITGRSHQLRVHMLAMGHPILGDGFYAHPEAKAMASRL 180

Query: 194 LLHAEMLTITHPAYGNSMTFKAPADF 219
            LHA+ L ITHP +G  M FK  A+F
Sbjct: 181 QLHAQQLCITHPEFGTPMHFKCEAEF 206



>ref|ZP_01536924.1| pseudouridine synthase [Serratia proteamaculans 568]
 gb|EAV31080.1| pseudouridine synthase [Serratia proteamaculans 568]
          Length = 216

 Score =  325 bits (833), Expect = 1e-87
 Identities = 165/217 (76%), Positives = 179/217 (82%), Gaps = 1/217 (0%)

Query: 3   MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHR 62
           ME YNPPQ P + ILYQD+HIMVVNKPSGLLSVPGR  E+KDS+MTRI  D+P AESVHR
Sbjct: 1   MEPYNPPQGP-MHILYQDEHIMVVNKPSGLLSVPGRAPENKDSLMTRILADHPAAESVHR 59

Query: 63  LDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNR 122
           LDMATSGVIVVAL KAAERELKRQFR+REPKK Y+ARV GH    EGLVDLPLICDWPNR
Sbjct: 60  LDMATSGVIVVALNKAAERELKRQFRDREPKKSYIARVSGHLEHDEGLVDLPLICDWPNR 119

Query: 123 PKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 182
           P QKVC+ETGK AQTEY V+   AD + RV L PITGRSHQLRVHMLALGHPILGD FYA
Sbjct: 120 PLQKVCFETGKAAQTEYLVLSRDADGSTRVKLMPITGRSHQLRVHMLALGHPILGDGFYA 179

Query: 183 SPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
            PE +AMAPRL LHA+ L ITHPA+   M F+A  DF
Sbjct: 180 PPEVKAMAPRLQLHAQELRITHPAFQTPMHFRAEPDF 216



>ref|YP_001004987.1| ribosomal large subunit pseudouridine synthase A [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 emb|CAL10747.1| ribosomal large subunit pseudouridine synthase A [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 196

 Score =  309 bits (791), Expect = 8e-83
 Identities = 152/196 (77%), Positives = 166/196 (84%)

Query: 24  MVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAEREL 83
           MVVNK SGLLSVPGR  E+KDSVMTRIQ D+P AESVHRLDMATSGVIVVALTKAAEREL
Sbjct: 1   MVVNKASGLLSVPGRAPENKDSVMTRIQADFPSAESVHRLDMATSGVIVVALTKAAEREL 60

Query: 84  KRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVE 143
           KRQFREREPKK YVARVWGH +  EGL+DLPLICDWPNRPKQKVCYETGK +QT+Y+V+ 
Sbjct: 61  KRQFREREPKKSYVARVWGHLAQDEGLIDLPLICDWPNRPKQKVCYETGKSSQTQYQVLS 120

Query: 144 YAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTIT 203
             AD + RV L PITGRSHQLRVHMLA+GHPILGD FYA PEA+AMA RL LHA+ L IT
Sbjct: 121 RDADGSTRVKLSPITGRSHQLRVHMLAIGHPILGDGFYAHPEAKAMASRLQLHAQELCIT 180

Query: 204 HPAYGNSMTFKAPADF 219
           HP +G  M FK   +F
Sbjct: 181 HPEFGTVMHFKCEPEF 196



>ref|YP_087423.1| RluA protein [Mannheimia succiniciproducens MBEL55E]
 gb|AAU36838.1| RluA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 219

 Score =  289 bits (739), Expect = 8e-77
 Identities = 138/219 (63%), Positives = 165/219 (75%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           M +  YNPP EPWL I+Y D+HI+VVNKPSGLLSVPG    + DS M+R++  Y   E  
Sbjct: 1   MALIEYNPPTEPWLDIVYHDNHILVVNKPSGLLSVPGNQPRYYDSAMSRVKDKYGFCEPA 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSG+++ A++KAA+ ELKRQFRERE KK Y A VWGH     G V+LPL+CDW 
Sbjct: 61  HRLDMATSGILLFAMSKAADSELKRQFRERETKKYYEALVWGHLEQDSGEVNLPLVCDWE 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRP+Q +C+E GK A T+YEV++   +NT RV L PITGRSHQLR+HMLALGHPILGD+F
Sbjct: 121 NRPRQTICFERGKSAVTKYEVLQRLPNNTTRVKLTPITGRSHQLRLHMLALGHPILGDKF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YA P+A+ MAPRL LHAE LTI HP  G  MTF   ADF
Sbjct: 181 YAHPQAKTMAPRLCLHAESLTIKHPISGEEMTFFRLADF 219



>ref|YP_248428.1| ribosomal large subunit pseudouridine synthase A [Haemophilus
           influenzae 86-028NP]
 gb|AAX87768.1| ribosomal large subunit pseudouridine synthase A [Haemophilus
           influenzae 86-028NP]
          Length = 219

 Score =  285 bits (728), Expect = 2e-75
 Identities = 136/219 (62%), Positives = 170/219 (77%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           M +  YNPP EP+L I+YQD+H+ VVNKPSGLLSVPG   ++ DS M+R++  +   E  
Sbjct: 1   MALIEYNPPLEPYLDIIYQDNHLCVVNKPSGLLSVPGNQPQYYDSAMSRVKEKFGFCEPA 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSG+IV AL+KAA+RELKRQFREREPKK Y A VWGH     G V+LP+ICDW 
Sbjct: 61  HRLDMATSGIIVFALSKAADRELKRQFREREPKKHYQAIVWGHLEKDYGEVNLPMICDWE 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRP+Q++ +  GK A T++EV+    +N+ RV L P+TGRSHQLR+HMLALGHPILGD+F
Sbjct: 121 NRPRQRLDFVLGKRAVTKFEVLARLPNNSTRVKLTPVTGRSHQLRLHMLALGHPILGDKF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           Y+ P+A+AM+PRL LHAE LTITHP  G +MTF A +DF
Sbjct: 181 YSHPQAKAMSPRLCLHAEELTITHPITGETMTFNAKSDF 219



>ref|ZP_00733117.1| Pseudouridylate synthase [Actinobacillus succinogenes 130Z]
 gb|EAO49811.1| Pseudouridylate synthase [Actinobacillus succinogenes 130Z]
          Length = 219

 Score =  285 bits (728), Expect = 2e-75
 Identities = 133/219 (60%), Positives = 170/219 (77%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           M +  Y+PP+ P+L I++ D+HI+VVNKPSGLLSVPG   ++ DS M+R++  Y   E  
Sbjct: 1   MALIEYHPPKTPYLDIIHHDNHILVVNKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEPA 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSG+I+ A++K A+ ELKRQFRER+ +K Y A VWGHP    G V+LPLICDW 
Sbjct: 61  HRLDMATSGIILFAMSKLADSELKRQFRERQTEKFYQAVVWGHPKQDSGTVNLPLICDWE 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRP+Q++ +  GK A T++EV+E   +N+ R+ L PITGRSHQLR+HMLALGHPILGD+F
Sbjct: 121 NRPRQRIDFNAGKSAVTKFEVLERLPNNSTRLKLTPITGRSHQLRLHMLALGHPILGDKF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YA P+A+AMAPRL LHAE LTITHP  G +MTF+ PADF
Sbjct: 181 YAHPQAKAMAPRLYLHAESLTITHPVTGEAMTFRCPADF 219



>ref|ZP_00133946.2| COG0564: Pseudouridylate synthases, 23S RNA-specific
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
          Length = 222

 Score =  284 bits (727), Expect = 2e-75
 Identities = 136/222 (61%), Positives = 170/222 (76%), Gaps = 3/222 (1%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           M +  Y+PP EP+L  +Y+D+HI+V+NKPSGLLSVPG   E+ DS MTR+Q+ Y   E  
Sbjct: 1   MALIEYHPPLEPFLTEVYRDNHILVINKPSGLLSVPGNRPEYYDSAMTRVQQKYGFTEPA 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPA---EGLVDLPLIC 117
           HRLDMATSG+++ AL+KAAE+ELKRQFR+REPKK Y+A +WG         G ++ PLIC
Sbjct: 61  HRLDMATSGILLFALSKAAEKELKRQFRDREPKKHYIALLWGKLGEKVGDTGEMNFPLIC 120

Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177
           DW NRP+QK+CYE GK A T YEV+ +  +NT RV L PITGRSHQLRVH LALGHPILG
Sbjct: 121 DWENRPRQKICYERGKKAITHYEVLAHLPNNTTRVKLTPITGRSHQLRVHSLALGHPILG 180

Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           D+FYASP A++++PRL LHAE L+ITHP  G +MTF A  +F
Sbjct: 181 DKFYASPLAKSLSPRLCLHAESLSITHPITGEAMTFTAQTEF 222



>ref|ZP_00154655.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Haemophilus
           influenzae R2846]
          Length = 219

 Score =  284 bits (727), Expect = 2e-75
 Identities = 136/219 (62%), Positives = 170/219 (77%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           M +  YNPP EP+L I+YQD+H+ VVNKPSGLLSVPG   ++ DS M+R++  +   E  
Sbjct: 1   MALIEYNPPLEPYLDIIYQDNHLCVVNKPSGLLSVPGNQPQYYDSAMSRVKEKFGFCEPA 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSG+IV AL+KAA+RELKRQFREREPKK Y A VWGH     G V+LP+ICDW 
Sbjct: 61  HRLDMATSGIIVFALSKAADRELKRQFREREPKKHYQAIVWGHLENDYGEVNLPMICDWE 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRP+Q++ +  GK A T++EV+    +N+ RV L P+TGRSHQLR+HMLALGHPILGD+F
Sbjct: 121 NRPRQRLDFVLGKRAVTKFEVLARLPNNSTRVKLTPVTGRSHQLRLHMLALGHPILGDKF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           Y+ P+A+AM+PRL LHAE LTITHP  G +MTF A +DF
Sbjct: 181 YSHPQAKAMSPRLCLHAEELTITHPITGETMTFNAKSDF 219



>gb|EAJ15019.1| unknown [environmental sequence]
          Length = 225

 Score =  283 bits (723), Expect = 6e-75
 Identities = 143/214 (66%), Positives = 163/214 (76%), Gaps = 1/214 (0%)

Query: 6   YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65
           Y PP  PWL +LYQD  I+VVNKPSGLLSVPGR   H DSV  R++ D+P  + VHRLDM
Sbjct: 6   YQPPTTPWLDVLYQDKDIIVVNKPSGLLSVPGRDPSHYDSVYARVKADHPHCQIVHRLDM 65

Query: 66  ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125
           ATSGV+VVAL ++AERELKRQF +RE  K Y+ARV GH   A G VD PLICDWPNRPKQ
Sbjct: 66  ATSGVMVVALIRSAERELKRQFHDRETSKTYLARVAGHVKNATGSVDYPLICDWPNRPKQ 125

Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185
           KV +E GKP+ T +EV+  A  +T  V LKPITGRSHQLRVHM+ALGHPILGD FYA P 
Sbjct: 126 KVDHEIGKPSLTHFEVLSRAKRSTL-VKLKPITGRSHQLRVHMMALGHPILGDGFYADPL 184

Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           A+++APRLLLHA  LTI HP  G SMTF A A F
Sbjct: 185 AKSLAPRLLLHAAELTIKHPYTGESMTFSADAPF 218



>ref|ZP_01602309.1| Pseudouridylate synthase [Shewanella pealeana ATCC 700345]
 gb|EAW00075.1| Pseudouridylate synthase [Shewanella pealeana ATCC 700345]
          Length = 225

 Score =  283 bits (723), Expect = 6e-75
 Identities = 140/214 (65%), Positives = 163/214 (76%), Gaps = 1/214 (0%)

Query: 6   YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65
           Y+PP  PWL +L+QD  IMVVNKPSGLLSVPGR   H DS  TR+  ++P A+ VHRLDM
Sbjct: 6   YSPPTTPWLEVLHQDKDIMVVNKPSGLLSVPGRDPAHADSTYTRVLAEFPHAKIVHRLDM 65

Query: 66  ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125
           ATSGVIVVAL ++AE ELKRQFR+RE +K Y ARV GH   + G ++LPLICDWPNRPKQ
Sbjct: 66  ATSGVIVVALLRSAESELKRQFRDRETQKTYYARVAGHVKQSHGTINLPLICDWPNRPKQ 125

Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185
           KV ++ GKP+QT YEV+ Y   +T  V L PITGRSHQLRVHM+ALGHPILGD FYA P 
Sbjct: 126 KVDHKIGKPSQTHYEVISYGKRSTL-VKLTPITGRSHQLRVHMMALGHPILGDNFYADPL 184

Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           A+ +APRLLLHA+ LTITHP     MTF   A F
Sbjct: 185 AKRLAPRLLLHAQSLTITHPYTKEPMTFSCDAPF 218



>ref|NP_438775.1| hypothetical protein HI0617 [Haemophilus influenzae Rd KW20]
 sp|P44782|RLUA_HAEIN Ribosomal large subunit pseudouridine synthase A (rRNA-uridine
           isomerase A) (rRNA pseudouridylate synthase A)
 gb|AAC22276.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 219

 Score =  283 bits (723), Expect = 6e-75
 Identities = 135/219 (61%), Positives = 169/219 (77%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           M +  YNPP EP+L I+YQD+H+ VVNKPSGLLSVPG   ++ DS M+R++  +   E  
Sbjct: 1   MALIEYNPPLEPYLDIIYQDNHLCVVNKPSGLLSVPGNQPQYYDSAMSRVKEKFGFCEPA 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSG+IV AL+KAA+RELKRQFREREPKK Y A VWGH     G V+LP+ICDW 
Sbjct: 61  HRLDMATSGIIVFALSKAADRELKRQFREREPKKHYQAIVWGHLENDYGEVNLPMICDWE 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRP+Q++ +  GK A T++EV+    +N+ RV L P+TGRSHQLR+HMLALGHPILGD+F
Sbjct: 121 NRPRQRLDFVLGKRAVTKFEVLARLPNNSTRVKLTPVTGRSHQLRLHMLALGHPILGDKF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           Y+ P+A+ M+PRL LHAE LTITHP  G +MTF A +DF
Sbjct: 181 YSHPQAKVMSPRLCLHAEELTITHPITGETMTFNAKSDF 219



>ref|ZP_00156579.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Haemophilus
           influenzae R2866]
          Length = 219

 Score =  281 bits (720), Expect = 1e-74
 Identities = 135/219 (61%), Positives = 169/219 (77%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           M +  YNPP EP+L I+YQD+H+ VVNKPSGLLSVPG   ++ DS M+R++  +   E  
Sbjct: 1   MALIEYNPPLEPYLDIIYQDNHLCVVNKPSGLLSVPGNQPQYYDSAMSRVKEKFGFCEPA 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDMATSG+IV AL+KAA+RELKRQFREREPKK Y A VWGH     G V+LP+ICDW 
Sbjct: 61  HRLDMATSGIIVFALSKAADRELKRQFREREPKKHYQAIVWGHLENDYGEVNLPMICDWE 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRP+Q++ +  GK A T++EV+    +N+ RV L P+TGRSHQLR+HMLA GHPILGD+F
Sbjct: 121 NRPRQRLDFVLGKRAVTKFEVLARLPNNSTRVKLTPVTGRSHQLRLHMLASGHPILGDKF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           Y+ P+A+AM+PRL LHAE LTITHP  G +MTF A +DF
Sbjct: 181 YSHPQAKAMSPRLCLHAEELTITHPITGETMTFNANSDF 219



>ref|NP_874128.1| pseudouridylate synthase [Haemophilus ducreyi 35000HP]
 sp|P59831|RLUA_HAEDU Ribosomal large subunit pseudouridine synthase A (rRNA-uridine
           isomerase A) (rRNA pseudouridylate synthase A)
 gb|AAP96517.1| ribosomal large subunit pseudouridine synthase A [Haemophilus
           ducreyi 35000HP]
          Length = 222

 Score =  281 bits (718), Expect = 2e-74
 Identities = 135/222 (60%), Positives = 167/222 (75%), Gaps = 3/222 (1%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           M +  Y+PP  P+L  +Y+D+HI+V+NKPSGLLSVPG   E+ DSVMTR+Q+ Y  AE  
Sbjct: 1   MALIEYHPPLNPFLEEVYRDNHIVVINKPSGLLSVPGNRPEYYDSVMTRVQQRYGFAEPA 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGL---VDLPLIC 117
           HRLDMATSG+I++AL+K AE+ELKRQFR+REPKK Y+A +WG      G    ++ PLIC
Sbjct: 61  HRLDMATSGIILLALSKVAEKELKRQFRDREPKKHYIALLWGKLGDRVGQTGEINFPLIC 120

Query: 118 DWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILG 177
           DW NRP+QK+CYE GK A T YEV+E+ A+NT RV   PITGRSHQLRVH LALGHPI+G
Sbjct: 121 DWENRPRQKICYERGKKATTHYEVLEHLANNTTRVKFTPITGRSHQLRVHSLALGHPIIG 180

Query: 178 DRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           D+FYA+P A+++APRL LHAE LTI HP     MTF     F
Sbjct: 181 DKFYANPLAKSLAPRLCLHAESLTIAHPISAELMTFNTEPTF 222



>ref|YP_868443.1| pseudouridine synthase [Shewanella sp. ANA-3]
 gb|ABK47037.1| pseudouridine synthase [Shewanella sp. ANA-3]
          Length = 225

 Score =  280 bits (717), Expect = 3e-74
 Identities = 142/214 (66%), Positives = 162/214 (75%), Gaps = 1/214 (0%)

Query: 6   YNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDM 65
           Y PP  PWL +LYQD  I+VVNKPSGLLSVPGR   H DSV  R++ ++P  + VHRLDM
Sbjct: 6   YQPPTTPWLDVLYQDKDIIVVNKPSGLLSVPGRDPAHYDSVYARVKAEHPHCQIVHRLDM 65

Query: 66  ATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ 125
           ATSGVIVVAL ++AERELKRQF +RE  K Y+ARV GH     G VD PLICDWPNRPKQ
Sbjct: 66  ATSGVIVVALIRSAERELKRQFHDRETSKTYLARVAGHVKNTTGSVDYPLICDWPNRPKQ 125

Query: 126 KVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPE 185
           KV +E GKP+ T +EV+  A  +T  V LKPITGRSHQLRVHM+ALGHPILGD FYA P 
Sbjct: 126 KVDHEIGKPSLTHFEVLSRAKRSTL-VKLKPITGRSHQLRVHMMALGHPILGDGFYADPL 184

Query: 186 ARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           A+++APRLLLHA  LTI HP  G SMTF A A F
Sbjct: 185 AKSLAPRLLLHAAELTIKHPYTGESMTFSANASF 218



>ref|NP_246775.1| RsuA [Pasteurella multocida subsp. multocida str. Pm70]
 sp|Q9CK02|RLUA_PASMU Ribosomal large subunit pseudouridine synthase A (rRNA-uridine
           isomerase A) (rRNA pseudouridylate synthase A)
 gb|AAK03920.1| RsuA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 219

 Score =  280 bits (715), Expect = 5e-74
 Identities = 132/219 (60%), Positives = 165/219 (75%)

Query: 1   MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60
           M + +Y PP +P+L I++ DDH +V+NKPSGLLSVPG   ++ DS M+R++  Y   E  
Sbjct: 1   MALISYTPPTDPYLDIVHYDDHFVVINKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEPA 60

Query: 61  HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120
           HRLDM+TSG+I+ AL+K A+RELKRQFREREPKK Y A VWGH    +G V+LPLICDW 
Sbjct: 61  HRLDMSTSGLILFALSKVADRELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDWE 120

Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180
           NRP+QK+C+E GKPA T YEV+    +NT RV L PITGRSHQLR+HMLALGHPILGD+F
Sbjct: 121 NRPRQKICFERGKPALTLYEVLARYPNNTTRVKLTPITGRSHQLRLHMLALGHPILGDKF 180

Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219
           YA P+A+A++PRL LHAE L   HP     ++F AP  F
Sbjct: 181 YAPPQAKALSPRLCLHAEQLAFRHPITQEWLSFSAPPAF 219



>ref|YP_736883.1| Pseudouridylate synthase [Shewanella sp. MR-7]