GenePage for the yejO' pseudogene of Escherichia coli K-12

Primary Gene Name: yejO'
EcoGene Accession Number: EG12051
K-12 Gene Accession Number: ECK2184
MG1655 Gene Identifier: b2190
Gene Name Mnemonic: Systematic nomenclature
Alternate Gene Symbols: None
Description: Pseudogene reconstruction, autotransporter homolog; interrupted by IS5K
  # bp Upstream # bp Downstream
MW: 91201.97 ---------863 aa Pre-Run BlastP UniProt
Pre-Run BlastP NR+Env
Left End: 2286390
Left Intergenic Region

Name: proL_yejO

Length: 102 bp gap

Orientation: Convergent

Left_end: 2286288

Right_end: 2286389

Centisome: 49.26

Genomic Address join

The following join statement uses GenBank syntax to describe how the reconstructed IS-interrupted yejO pseudogene protein sequence was translated from the DNA:

complement(join(2286390..2288914,2290114..2290180))


Counterclockwise
Minute or Centisome (%) = 49.26
Right End: 2290180
Right Intergenic Region

Name: yejO_insH11

Length: 150 bp gap

Orientation: Codirectional-

Left_end: 2288915

Right_end: 2289064

Centisome: 49.31

IS5K inserted at codon 21 and made a 4 bp target site duplication TTAT. The first 29 aa are predicted to be a signal peptide. Uninterrupted versions are present (with allelic polymorphisms) in all Shigella strains and in several non-K-12 E. coli strains, e.g. O157:H7 and CFT073, although this highly likely alternative start site is not annotated in any of them.

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BamHI EcoRI HindIII