GenePage for the yjgX' pseudogene of Escherichia coli K-12

Primary Gene Name: yjgX'
EcoGene Accession Number: EG12543
K-12 Gene Accession Number: ECK4266
MG1655 Gene Identifier: b4274, b4575, b4560, b4276, b4275
Gene Name Mnemonic: Systematic nomenclature
Alternate Gene Symbols: yjgW; yjgY
Description: Pseudogene reconstruction, EptAB family
  # bp Upstream # bp Downstream
MW: 44489.59 ---------399 aa Pre-Run BlastP UniProt
Pre-Run BlastP NR+Env
Left End: 4499593
Left Intergenic Region

Name: insD11_yjgX

Length: 92 bp gap

Orientation: Convergent

Left_end: 4499501

Right_end: 4499592

Centisome: 96.94

Genomic Address join

The following join statement uses GenBank syntax to describe how the reconstructed frameshifted yjgX pseudogene protein sequence was translated from the DNA:

complement(join(4499593..4500534,4500534..4500791))


Counterclockwise
Minute or Centisome (%) = 96.94
Right End: 4500791
Right Intergenic Region

Name: yjgX_yjgZ

Length: 468 bp gap

Orientation: Divergent

Left_end: 4500792

Right_end: 4501259

Centisome: 96.97

An apparent frameshift at codon 87 and two in-frame stop codons 250 and 372 were hypothetically reconstructed. An open reading frame on the opposite strand of yjgX' was called yjgW but is unlikely to be a real gene and has been dropped; yjgW is added as a synonym for yjgX as they occupy the same region of DNA, the b number for yjgW is b4274 and has been added as an extra b number to yjgX'. The ECK4265 number assigned to yjgW has been droppped.

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BamHI EcoRI HindIII