GenePage for the ygaY' pseudogene of Escherichia coli K-12

Primary Gene Name: ygaY'
EcoGene Accession Number: EG13527
K-12 Gene Accession Number: ECK2674
MG1655 Gene Identifier: b2681, b2680
Gene Name Mnemonic: Systematic nomenclature
Alternate Gene Symbols: ygaX
Description: Pseudogene reconstruction, MFS family
  # bp Upstream # bp Downstream
MW: 41655.29 ---------394 aa Pre-Run BlastP UniProt
Pre-Run BlastP NR+Env
Left End: 2808316
Left Intergenic Region

Name: proX_ygaY

Length: 191 bp gap

Orientation: Codirectional+

Left_end: 2808125

Right_end: 2808315

Centisome: 60.50

Genomic Address join

The following join statement uses GenBank syntax to describe how the reconstructed frameshifted ygaY pseudogene protein sequence was translated from the DNA:

join(2808316..2808576,2808570..2809493)


Clockwise
Minute or Centisome (%) = 60.50
Right End: 2809493
Right Intergenic Region

Name: ygaY_ygaZ

Length: 123 bp gap

Orientation: Codirectional+

Left_end: 2809494

Right_end: 2809616

Centisome: 60.53

A 7 bp deletion at codon 88 caused a frameshift and deleted 2 codons; the reconstructed sequence is presented. An intact version of YgaY is present in E. coli O157:H7 as Z3982. Major Facilitator Superfamily (MFS).

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BamHI EcoRI HindIII