GenePage for the ybcY' pseudogene of Escherichia coli K-12

Primary Gene Name: ybcY'
EcoGene Accession Number: EG13641
K-12 Gene Accession Number: ECK0554
MG1655 Gene Identifier: b0562
Gene Name Mnemonic: Systematic nomenclature
Alternate Gene Symbols: None
Description: Pseudogene reconstruction, predicted methyltransferase, DLP12
  # bp Upstream # bp Downstream
MW: 24013.33 ---------218 aa Pre-Run BlastP UniProt
Pre-Run BlastP NR+Env
Left End: 582152
Left Intergenic Region

Name: tfaD_ybcY

Length: 54 bp gap

Orientation: Convergent

Left_end: 582098

Right_end: 582151

Centisome: 12.54

Genomic Address join

The following join statement uses GenBank syntax to describe how the reconstructed frameshifted ybcY pseudogene protein sequence was translated from the DNA:

complement(join(582152..582804,582803..582806))


Counterclockwise
Minute or Centisome (%) = 12.54
Right End: 582806
Right Intergenic Region

Name: ybcY_tfaX

Length: 146 bp gap

Orientation: Divergent

Left_end: 582807

Right_end: 582952

Centisome: 12.56

A two base pair deletion has removed the "G" of the ATG start codon and one "A" of the second codon (for lysine). The intact YbcY protein from E. coli O157:H7 is Z1925. An ALT_INIT at -4 codons of Z1925 is used in the frameshift reconstruction.

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BamHI EcoRI HindIII