Microarray Experiment Search Results for fkpB

27 total

Reference	Variable	Value    fold ratio ln log2	Experiments	Contact
Abed,2007	fur	3.76	Gene_3, Exp Data	Pierre Colas Isabelle Michaud-Soret
Abed,2007	fur	4.66	Gene_2, Exp Data	Pierre Colas Isabelle Michaud-Soret
Abed,2007	fur	5.61	Gene_1, Exp Data	Pierre Colas Isabelle Michaud-Soret
Kohanski,2007	norfloxacin (30min)	-6.598	Chemical_1, Exp Data	James J. Collins
Kohanski,2007	norfloxacin (60min)	-3.847	Chemical_2, Exp Data	James J. Collins
Kohanski,2007	norfloxacin (120min)	-2.349	Chemical_3, Exp Data	James J. Collins
Kohanski,2007	norfloxacin (120min) / spectinmycin	-3.707	Chemical_12, Exp Data	James J. Collins
Kohanski,2007	norfloxacin (60min) / spectinmycin	-3.357	Chemical_11, Exp Data	James J. Collins
Kohanski,2007	ampicillin (30min) / spectinmycin	3.211	Chemical_13, Exp Data	James J. Collins
Kohanski,2007	kanamycin (30min) / spectinmycin	3.466	Chemical_16, Exp Data	James J. Collins
Partridge,2006	anaerobic steady state vs air exposure	-3.362	Growth_1, Exp Data	Jeffrey Green
Partridge,2006	anaerobic steady state vs air exposure	-3.203	Growth_2, Exp Data	Jeffrey Green
Boccazzi,2005	LB vs DM	2.828	Growth_1, Exp Data	Paolo Boccazzi
Mukhopadhyay,2004	nitrosylated glutathione (GSNO)	-3.704	Chemical_2, Exp Data	Gisela Storz
Mukhopadhyay,2004	sodium nitrite (NaNO2)	-2.857	Chemical_4, Exp Data	Gisela Storz
Peter,2004	norfloxacin	-3.704	Chemical_13, Exp Data	Brian J Peter
Peter,2004	norfloxacin	-3.449	Chemical_14, Exp Data	Brian J Peter
Peter,2004	norfloxacin	-2.673	Chemical_15, Exp Data	Brian J Peter
Peter,2004	norfloxacin	-2.173	Chemical_7, Exp Data	Brian J Peter
Peter,2004	norfloxacin	-4.347	Chemical_8, Exp Data	Brian J Peter
Peter,2004	norfloxacin	-4.167	Chemical_9, Exp Data	Brian J Peter
Peter,2004	norfloxacin	-3.125	Chemical_10, Exp Data	Brian J Peter
Peter,2004	novobiocin	-2	Chemical_25, Exp Data	Brian J Peter
Peter,2004	novobiocin	-3.704	Chemical_26, Exp Data	Brian J Peter
Peter,2004	novobiocin	-5.556	Chemical_27, Exp Data	Brian J Peter
Peter,2004	37C vs 42C	-3.227	Growth_28, Exp Data	Brian J Peter
Zheng,2001	hydrogen peroxide (H2O2)	-2.168	Chemical_2, Exp Data	Gisela Storz

Experimental Details

Abed,2007 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 3 Show Data fur plasmid produciton of aptamer 2 Show Data fur Fur90(dominant negative) 1 Show Data fur knockout

Kohanski,2007 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 1 Show Data norfloxacin (30min) 250 ng/ml early log phase 30 min 2 Show Data norfloxacin (60min) 250 ng/ml early log phase 60 min 3 Show Data norfloxacin (120min) 250 ng/ml early log phase 120 min 12 Show Data norfloxacin (120min) / spectinmycin 250 ng/ml early log phase 120 min 11 Show Data norfloxacin (60min) / spectinmycin 250 ng/ml early log phase 60 min 13 Show Data ampicillin (30min) / spectinmycin 5 ug/ml early log phase 30 min 16 Show Data kanamycin (30min) / spectinmycin 5 ug/ml early log phase 30 min

Partridge,2006 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data anaerobic steady state vs air exposure air exposure steady 5 min 2 Show Data anaerobic steady state vs air exposure air exposure steady 10 min

Boccazzi,2005 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data LB vs DM DM steady OD600=1.0 grown in microbioreactior (50ul)

Mukhopadhyay,2004 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 2 Show Data nitrosylated glutathione (GSNO) 1mM exponential phase 5 min LB rich 4 Show Data sodium nitrite (NaNO2) 1mM exponential phase 5 min LB rich

Peter,2004 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 13 Show Data norfloxacin 15 ug/ml 10 min gyrA+/parCr 14 Show Data norfloxacin 15 ug/ml 20 min gyrA+/parCr 15 Show Data norfloxacin 15 ug/ml 30 min gyrA+/parCr 7 Show Data norfloxacin 50ug/ml 5 min gyrAr/parCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic. 8 Show Data norfloxacin 50ug/ml 10 min gyrAr/parCCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic. 9 Show Data norfloxacin 50ug/ml 20 min gyrAr/parCCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic. 10 Show Data norfloxacin 50ug/ml 30min gyrAr/parCCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic. 25 Show Data novobiocin 20 ug/ml 5 min 26 Show Data novobiocin 50 ug/ml 5 min 27 Show Data novobiocin 200 ug/ml 5 min growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 28 Show Data 37C vs 42C 42C steady 2 min gyrB+, served as a control for the gyrB ts experiments to ensure changes due to gyrB mutation, not temperature shift.

Zheng,2001 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 2 Show Data hydrogen peroxide (H2O2) 1mM OD600=0.2-0.5 10 min oxyR deletion mutant, in LB media