Microarray Experiment Search Results for nhaR

20 total

Reference	Variable	Value    fold ratio ln log2	Experiments	Contact
White-Ziegler,2009	vs temperature, 37/23, WT	-2.5	Growth_1, Exp Data	White-Zeigler CA
Stoebel,2009	rpoS+2 WT evolved strain	2.109	Gene_3, Exp Data	Charles J. Dorman
Stoebel,2009	rpoS+3 WT evolved strain	2.155	Gene_4, Exp Data	Charles J. Dorman
Stoebel,2009	rpoS+4 wt evolved strain	2.071	Gene_5, Exp Data	Charles J. Dorman
Kohanski,2007	norfloxacin (120min)	2.463	Chemical_3, Exp Data	James J. Collins
Kohanski,2007	kanamycin (60min)	3.518	Chemical_8, Exp Data	James J. Collins
Kohanski,2007	kanamycin (120min)	3.802	Chemical_9, Exp Data	James J. Collins
Kohanski,2007	ampicillin (60min) / spectinmycin	-2.108	Chemical_14, Exp Data	James J. Collins
Kohanski,2007	kanamycin (120min) / spectinmycin	2	Chemical_18, Exp Data	James J. Collins
Zhao,2005	rpoH	2.07	Gene_2, Exp Data	Richard R. Burgess
Boccazzi,2005	LB vs DM	-2.462	Growth_1, Exp Data	Paolo Boccazzi
Kabir,2004	- NH4Cl (Ammonium Chloride) vs +NH4Cl (Ammonium Chloride)	-2.355	Growth_1, Exp Data	Mamoru Yamada
Peter,2004	norfloxacin	2.32	Chemical_4, Exp Data	Brian J Peter
Peter,2004	norfloxacin	2.289	Chemical_21, Exp Data	Brian J Peter
Peter,2004	norfloxacin	3.211	Chemical_24, Exp Data	Brian J Peter
Peter,2004	norfloxacin	3.869	Chemical_13, Exp Data	Brian J Peter
Peter,2004	norfloxacin	2.25	Chemical_14, Exp Data	Brian J Peter
Peter,2004	gyrB	2.02	Gene_32, Exp Data	Brian J Peter
Li,2003	rnpA	3.6	Gene_1, Exp Data	Sidney Altman
Eguchi,2003	evgS	3.35	Gene_1, Exp Data	Ryutaro

Experimental Details

White-Ziegler,2009 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data vs temperature, 37/23, WT temperature, 37/23, WT

Stoebel,2009 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 3 Show Data rpoS+2 WT evolved strain rpoS+2 4 Show Data rpoS+3 WT evolved strain rpoS+3 5 Show Data rpoS+4 wt evolved strain rpoS+4

Kohanski,2007 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 3 Show Data norfloxacin (120min) 250 ng/ml early log phase 120 min 8 Show Data kanamycin (60min) 5 ug/ml early log phase 60 min 9 Show Data kanamycin (120min) 5 ug/ml early log phase 120 min 14 Show Data ampicillin (60min) / spectinmycin 5 ug/ml early log phase 60 min 18 Show Data kanamycin (120min) / spectinmycin 5 ug/ml early log phase 120 min

Zhao,2005 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data rpoH pTet32 over expression plasmid (overexpression) MOPS + 0.1% glucose +0.66mM K2HPO4; RNA extracted 10 min post induction.

Boccazzi,2005 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data LB vs DM DM steady OD600=1.0 grown in microbioreactior (50ul)

Kabir,2004 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data - NH4Cl (Ammonium Chloride) vs +NH4Cl (Ammonium Chloride) +NH4Cl (Ammonium Chloride) steady 3 hr rpoS mutant (rpoS(33am)) was starved for nitrogen for 3h in M9 minimal media lacking NH4Cl and compared to mutant cells exposed to NH4Cl.

Peter,2004 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 4 Show Data norfloxacin 15ug/ml 20 min gyrAr/parCCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic. 21 Show Data norfloxacin 15 ug/ml 2 min gyrA+/parC+ 24 Show Data norfloxacin 15 ug/ml 5 min gyrA+/parC+ 13 Show Data norfloxacin 15 ug/ml 10 min gyrA+/parCr 14 Show Data norfloxacin 15 ug/ml 20 min gyrA+/parCr gene experimental details: Exp ID Exp Data Gene name Allele Comments 32 Show Data gyrB gyrB ts(temperature sensitive) 42C for 2 minutes compared to gyrBts at 37C

Li,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data rnpA A49 to G(temperature sensitive, point mutation) At OD600=0.25 culture was shifted from 30C to 42C. 0min time point.

Eguchi,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data evgS evgS1(constitutive) constitutive evgS mutant was constructed in a MC4100 background with delta ara-leu, lambda RS45[phage(emrK'-lacZ)]