Microarray Experiment Search Results for rihC

22 total

Reference	Variable	Value    fold ratio ln log2	Experiments	Contact
Nahku,2010	vs	-6.25	Growth_1, Exp Data	Vilu R.
Aberg,2009	dksA	-2.144	Gene_2, Exp Data	Carlos Balsalobre
White-Ziegler,2007	37C vs 23C	3.3	Growth_1, Exp Data	Christine White-Ziegler
Kohanski,2007	ampicillin (30min) / spectinmycin	2.268	Chemical_13, Exp Data	James J. Collins
Kohanski,2007	kanamycin (30min) / spectinmycin	2.436	Chemical_16, Exp Data	James J. Collins
Zhao,2005	rpoH	2.35	Gene_2, Exp Data	Richard R. Burgess
Gadgil,2005	37C vs 33C	2.297	Growth_1, Exp Data	Wei-Shou Hu
Fong,2005	glucose vs lactate	2.518	Growth_1, Exp Data	Bernhard O. Palsson
Lease,2004	dsrA	-2.1	Gene_1, Exp Data	Richard A. Lease
Peter,2004	norfloxacin	-2.127	Chemical_3, Exp Data	Brian J Peter
Peter,2004	norfloxacin	3.38	Chemical_19, Exp Data	Brian J Peter
Peter,2004	novobiocin	-2.439	Chemical_25, Exp Data	Brian J Peter
Peter,2004	novobiocin	-2.173	Chemical_26, Exp Data	Brian J Peter
Peter,2004	novobiocin	-5.263	Chemical_27, Exp Data	Brian J Peter
Peter,2004	37C vs 42C	-2.127	Growth_30, Exp Data	Brian J Peter
Polen,2003	no sodium acetate vs 20mM sodium acetate	-2.857	Growth_2, Exp Data	V. F. Wendisch
Polen,2003	no sodium propionate vs 20mM sodium propionate	-2.381	Growth_1, Exp Data	V. F. Wendisch
Li,2003	rnpA	2.8	Gene_1, Exp Data	Sidney Altman
Li,2003	rnpA	2.7	Gene_4, Exp Data	Sidney Altman
Gutiérrez-Ríos,2003	mid log vs stationary	-6.234	Growth_2, Exp Data	Julio Collado-Vides
Inoue,2002	era	2.23	Gene_1, Exp Data	M. Inouye
Inoue,2002	era	2.43	Gene_2, Exp Data	M. Inouye

Experimental Details

Nahku,2010 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data vs

Aberg,2009 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data dksA

White-Ziegler,2007 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data 37C vs 23C 23C steady 9-11 generations M9 glycerol medium with aeration, strain MC4100. Comparison is steady state 37C over 23C.

Kohanski,2007 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 13 Show Data ampicillin (30min) / spectinmycin 5 ug/ml early log phase 30 min 16 Show Data kanamycin (30min) / spectinmycin 5 ug/ml early log phase 30 min

Zhao,2005 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data rpoH pTet32 over expression plasmid (overexpression) MOPS + 0.1% glucose +0.66mM K2HPO4; RNA extracted 10 min post induction.

Gadgil,2005 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data 37C vs 33C 33C OD600=0.6 5 min Cells were shifted from 37C to 33C, RNA was extracted 5 min post shift. Cultures were grown in minimal media.

Fong,2005 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data glucose vs lactate lactate steady 1day

Lease,2004 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data dsrA pBRdsrA(overexpression) RNA extraction at OD600=0.3-0.4.

Peter,2004 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 3 Show Data norfloxacin 15ug/ml 10 min gyrAr/parCCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic. 19 Show Data norfloxacin 50 ug/ml 20 min gyrA+/parC+ 25 Show Data novobiocin 20 ug/ml 5 min 26 Show Data novobiocin 50 ug/ml 5 min 27 Show Data novobiocin 200 ug/ml 5 min growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 30 Show Data 37C vs 42C 42C steady 10 min gyrB+, served as a control for the gyrB ts experiments to ensure changes due to gyrB mutation, not temperature shift.

Polen,2003 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 2 Show Data no sodium acetate vs 20mM sodium acetate 20mM sodium acetate steady OD600=0.4-0.5 cultures were grown in complex media with or without sodium aceate for 20 generations at a pH 6.6-6.9 prior to RNA extraction. 1 Show Data no sodium propionate vs 20mM sodium propionate 20mM sodium propionate steady OD600=0.3-0.5 cultures were grown in complex media with or without sodium propionate for 20 generations at a pH 6.6-6.9 prior to RNA extraction.

Li,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data rnpA A49 to G(temperature sensitive, point mutation) At OD600=0.25 culture was shifted from 30C to 42C. 0min time point. 4 Show Data rnpA A49 to G(temperature sensitive) RNA extracted at 15 min post 42C shift was compared to RNA extracted at 45 min post 42C shift.

Gutiérrez-Ríos,2003 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 2 Show Data mid log vs stationary stationary steady OD600=1.5 cells were grown to stationary phase in MOPS+ 0.2% glucose.

Inoue,2002 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data era era-dE(over expression) 2 Show Data era era-dE(over expression)