Microarray Experiment Search Results for sgrR

25 total

Reference	Variable	Value    fold ratio ln log2	Experiments	Contact
Kohanski,2007	norfloxacin (30min) / spectinmycin	-2.53	Chemical_10, Exp Data	James J. Collins
Kohanski,2007	norfloxacin (60min) / spectinmycin	2.171	Chemical_11, Exp Data	James J. Collins
Kohanski,2007	kanamycin (60min) / spectinmycin	2.218	Chemical_17, Exp Data	James J. Collins
Gadgil,2005	37C vs 28C	2.713	Growth_9, Exp Data	Wei-Shou Hu
Gadgil,2005	37C vs 33C	2.732	Growth_2, Exp Data	Wei-Shou Hu
Gadgil,2005	37C vs 28C	3.182	Growth_10, Exp Data	Wei-Shou Hu
Gadgil,2005	37C vs 33C	4.141	Growth_3, Exp Data	Wei-Shou Hu
Gadgil,2005	37C vs 28C	12.641	Growth_11, Exp Data	Wei-Shou Hu
Gadgil,2005	37C vs 33C	3.458	Growth_4, Exp Data	Wei-Shou Hu
Gadgil,2005	37C vs 33C	2.549	Growth_5, Exp Data	Wei-Shou Hu
Gadgil,2005	37C vs 28C	2.694	Growth_14, Exp Data	Wei-Shou Hu
Yoshida,2004	putrescine	-6.667	Chemical_1, Exp Data	Kazuei Igarashi
Peter,2004	norfloxacin	2.17	Chemical_13, Exp Data	Brian J Peter
Peter,2004	norfloxacin	2.149	Chemical_7, Exp Data	Brian J Peter
Peter,2004	norfloxacin	2.43	Chemical_9, Exp Data	Brian J Peter
Peter,2004	novobiocin	2.341	Chemical_25, Exp Data	Brian J Peter
Peter,2004	novobiocin	3.66	Chemical_26, Exp Data	Brian J Peter
Peter,2004	novobiocin	2.951	Chemical_27, Exp Data	Brian J Peter
Peter,2004	37C vs 42C	2.28	Growth_28, Exp Data	Brian J Peter
Peter,2004	37C vs 42C	3.149	Growth_29, Exp Data	Brian J Peter
Peter,2004	gyrB	3.85	Gene_32, Exp Data	Brian J Peter
Peter,2004	gyrB	5.039	Gene_33, Exp Data	Brian J Peter
Peter,2004	gyrB	3.2	Gene_34, Exp Data	Brian J Peter
Li,2003	rnpA	2	Gene_2, Exp Data	Sidney Altman
Li,2003	rnpA	2.6	Gene_4, Exp Data	Sidney Altman

Experimental Details

Kohanski,2007 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 10 Show Data norfloxacin (30min) / spectinmycin 250 ng/ml early log phase 30 min 11 Show Data norfloxacin (60min) / spectinmycin 250 ng/ml early log phase 60 min 17 Show Data kanamycin (60min) / spectinmycin 5 ug/ml early log phase 60 min

Gadgil,2005 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 9 Show Data 37C vs 28C 28C OD600=0.6 10 min Cells were shifted from 37C to 28C, RNA was extracted 10 min post shift. Cultures were grown in minimal media. 2 Show Data 37C vs 33C 33C OD600=0.6 10 min Cells were shifted from 37C to 33C, RNA was extracted 10 min post shift. Cultures were grown in minimal media. 10 Show Data 37C vs 28C 28C OD600=0.6 20 min Cells were shifted from 37C to 28C, RNA was extracted 20 min post shift. Cultures were grown in minimal media. 3 Show Data 37C vs 33C 33C OD600=0.6 20 min Cells were shifted from 37C to 33C, RNA was extracted 20 min post shift. Cultures were grown in minimal media. 11 Show Data 37C vs 28C 28C OD600=0.6 30 min Cells were shifted from 37C to 28C, RNA was extracted 30 min post shift. Cultures were grown in minimal media. 4 Show Data 37C vs 33C 33C OD600=0.6 30 min Cells were shifted from 37C to 33C, RNA was extracted 30 min post shift. Cultures were grown in minimal media. 5 Show Data 37C vs 33C 33C OD600=0.6 60 min Cells were shifted from 37C to 33C, RNA was extracted 60 min post shift. Cultures were grown in minimal media. 14 Show Data 37C vs 28C 28C OD600=0.6 120 min Cells were shifted from 37C to 28C, RNA was extracted 120 min post shift. Cultures were grown in minimal media.

Yoshida,2004 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 1 Show Data putrescine 100 µg/ml A540=0.2 Medium A + 5 100mM of each of the following amino acids: gly, leu, met, ser, thr; MA261 requires polyamines.

Peter,2004 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 13 Show Data norfloxacin 15 ug/ml 10 min gyrA+/parCr 7 Show Data norfloxacin 50ug/ml 5 min gyrAr/parCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic. 9 Show Data norfloxacin 50ug/ml 20 min gyrAr/parCCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic. 25 Show Data novobiocin 20 ug/ml 5 min 26 Show Data novobiocin 50 ug/ml 5 min 27 Show Data novobiocin 200 ug/ml 5 min growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 28 Show Data 37C vs 42C 42C steady 2 min gyrB+, served as a control for the gyrB ts experiments to ensure changes due to gyrB mutation, not temperature shift. 29 Show Data 37C vs 42C 42C steady 5 min gyrB+, served as a control for the gyrB ts experiments to ensure changes due to gyrB mutation, not temperature shift. gene experimental details: Exp ID Exp Data Gene name Allele Comments 32 Show Data gyrB gyrB ts(temperature sensitive) 42C for 2 minutes compared to gyrBts at 37C 33 Show Data gyrB gyrB ts(temperature sensitive) 42C for 5 minutes compared to gyrB ts at 37C 34 Show Data gyrB gyrB ts(temperature sensitive) 42C for 10 minutes compared to gyrB ts at 37C

Li,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data rnpA A49 to G(temperature sensitive) RNA was extracted 15 min post shift from 30C to 42C. 4 Show Data rnpA A49 to G(temperature sensitive) RNA extracted at 15 min post 42C shift was compared to RNA extracted at 45 min post 42C shift.