Microarray Experiment Search Results for thrL

44 total

Reference	Variable	Value    fold ratio ln log2	Experiments	Contact
Stoebel,2009	rpoS+2 WT evolved strain	2.136	Gene_3, Exp Data	Charles J. Dorman
Stoebel,2009	rpoS+3 WT evolved strain	2.113	Gene_4, Exp Data	Charles J. Dorman
Stoebel,2009	rpoS+4 wt evolved strain	2.142	Gene_5, Exp Data	Charles J. Dorman
Durfee,2008	no stringent response vs stringent response (30 min)	5.028	Growth_5, Exp Data	Ding Jun Jin
Durfee,2008	no stringent response vs stringent response (5min)	3.531	Growth_1, Exp Data	Ding Jun Jin
Durfee,2008	no stringent response vs stringent response (10min)	3.655	Growth_3, Exp Data	Ding Jun Jin
Durfee,2008	no stringent response (relA) vs stringent response (10min; relA)	-3.272	Growth_4, Exp Data	Ding Jun Jin
Deana,2008	rppH	2.32	Gene_1, Exp Data	Joel G. Belasco
Traxler,2008	400uM isoleucine (WT) vs 60uM isoleucine (WT)	3.971	Growth_1, Exp Data	Tyrrell Conway
Domka,2007	4 hr biofilm vs 7 hr biofilm	-2.5	Growth_1, Exp Data	Thomas K. Wood
Domka,2007	15 hr biofilm vs 4 hr biofilm	-2	Growth_2, Exp Data	Thomas K. Wood
Domka,2007	24 hr biofilm vs 4 hr biofilm	-5.3	Growth_4, Exp Data	Thomas K. Wood
Domka,2007	24 hr biofilm vs 7 hr biofilm	-2	Growth_5, Exp Data	Thomas K. Wood
Domka,2007	24 hr biofilm vs 15 hr biofilm	-2.5	Growth_6, Exp Data	Thomas K. Wood
Domka,2007	15 hr suspension vs 4 hr suspension	-5.3	Growth_8, Exp Data	Thomas K. Wood
Domka,2007	24 hr suspension vs 4 hr suspension	-3	Growth_9, Exp Data	Thomas K. Wood
Domka,2007	24 hr suspension vs 7 hr suspension	-3.7	Growth_10, Exp Data	Thomas K. Wood
Lee,2007	ariR	2.3	Gene_1, Exp Data	Wolfgang Peti
Kohanski,2007	ampicillin (120min)	2.168	Chemical_6, Exp Data	James J. Collins
Kohanski,2007	kanamycin (60min)	4.276	Chemical_8, Exp Data	James J. Collins
Kohanski,2007	norfloxacin (120min) / spectinmycin	-6.743	Chemical_12, Exp Data	James J. Collins
Kohanski,2007	norfloxacin (60min) / spectinmycin	-5.152	Chemical_11, Exp Data	James J. Collins
Kohanski,2007	kanamycin (30min) / spectinmycin	-3.794	Chemical_16, Exp Data	James J. Collins
Kohanski,2007	ampicillin (30min) / spectinmycin	-3.523	Chemical_13, Exp Data	James J. Collins
Kohanski,2007	kanamycin (120min) / spectinmycin	-2.792	Chemical_18, Exp Data	James J. Collins
Kohanski,2007	ampicillin (60min) / spectinmycin	-2.782	Chemical_14, Exp Data	James J. Collins
Kohanski,2007	ampicillin (120) / spectinmycin	-2.479	Chemical_15, Exp Data	James J. Collins
Herzberg,2006	tqsA	-4.3	Gene_1, Exp Data	Thomas K. Wood
Haddadin,2005	isopropyl-1-thio-beta-D-galactopyranoside (IPTG)	-2.9	Chemical_8, Exp Data	Sarah Harcum
Mukhopadhyay,2004	norR	2.15	Gene_5, Exp Data	Gisela Storz
Mukhopadhyay,2004	fur	3.98	Gene_6, Exp Data	Gisela Storz
Mukhopadhyay,2004	oxyR	2.23	Gene_7, Exp Data	Gisela Storz
Peter,2004	norfloxacin	2.67	Chemical_8, Exp Data	Brian J Peter
Peter,2004	novobiocin	-5	Chemical_25, Exp Data	Brian J Peter
Peter,2004	novobiocin	-8.334	Chemical_26, Exp Data	Brian J Peter
Peter,2004	novobiocin	-4.266	Chemical_27, Exp Data	Brian J Peter
Bordi,2003	trimethylamine N-oxide (TMAO)	12.46	Chemical_1, Exp Data	Ce_cile Jourlin-Castelli
Bordi,2003	torS	7.38	Gene_3, Exp Data	Ce_cile Jourlin-Castelli
Li,2003	rnpA	2.8	Gene_2, Exp Data	Sidney Altman
Li,2003	rnpA	4.6	Gene_3, Exp Data	Sidney Altman
Salmon,2003	fnr	19.27	Gene_2, Exp Data	G. Wesley Hatfield
Sabina,2003	relA	3	Gene_7, Exp Data	Robert A. LaRossa
Hung,2002	lrp	3.24	Gene_1, Exp Data	G. Wesley Hatfield
Smulski,2001	Acivicin	6.6	Chemical_1, Exp Data	Rober a. LaRossa

Experimental Details

Stoebel,2009 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 3 Show Data rpoS+2 WT evolved strain rpoS+2 4 Show Data rpoS+3 WT evolved strain rpoS+3 5 Show Data rpoS+4 wt evolved strain rpoS+4

Durfee,2008 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 5 Show Data no stringent response vs stringent response (30 min) stringent response (30 min) OD600=0.2 1 Show Data no stringent response vs stringent response (5min) stringent response (5min) 3 Show Data no stringent response vs stringent response (10min) stringent response (10min) OD600=0.2 4 Show Data no stringent response (relA) vs stringent response (10min; relA) stringent response (10min; relA) OD600=0.2

Deana,2008 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data rppH RppH-E53A(point mutation)

Traxler,2008 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data 400uM isoleucine (WT) vs 60uM isoleucine (WT) 60uM isoleucine (WT) RNA was extracted at OD~0.6 (500min) Cells were grown in MOPS with 2.0g/L glucose and normal levels of all other amino acids (no uracil).

Domka,2007 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data 4 hr biofilm vs 7 hr biofilm 7 hr biofilm steady 4 and 7 hour RNA from biofilm cultures. 2 Show Data 15 hr biofilm vs 4 hr biofilm 4 hr biofilm steady 15 and 4 hour RNA from biofilm cultures. 4 Show Data 24 hr biofilm vs 4 hr biofilm 4 hr biofilm steady 24 and 4 hour RNA from biofilm cultures. 5 Show Data 24 hr biofilm vs 7 hr biofilm 7 hr biofilm steady 24 and 7 hour RNA from biofilm cultures. 6 Show Data 24 hr biofilm vs 15 hr biofilm 15 hr biofilm steady 24 and 15 hour RNA from biofilm cultures. 8 Show Data 15 hr suspension vs 4 hr suspension 4 hr suspension steady 15 and 4 hour RNA from suspension cultures. 9 Show Data 24 hr suspension vs 4 hr suspension 4 hr suspension steady 24 and 4 hour RNA from suspension cultures. 10 Show Data 24 hr suspension vs 7 hr suspension 7 hr suspension steady 24 and 7 hour RNA from suspension cultures.

Lee,2007 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data ariR ariR::km(deletion) 24 hr biofilm formation for mutant and isogenic BW25113 in LB+glucose.

Kohanski,2007 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 6 Show Data ampicillin (120min) 5 ug/ml early log phase 120 min 8 Show Data kanamycin (60min) 5 ug/ml early log phase 60 min 12 Show Data norfloxacin (120min) / spectinmycin 250 ng/ml early log phase 120 min 11 Show Data norfloxacin (60min) / spectinmycin 250 ng/ml early log phase 60 min 16 Show Data kanamycin (30min) / spectinmycin 5 ug/ml early log phase 30 min 13 Show Data ampicillin (30min) / spectinmycin 5 ug/ml early log phase 30 min 18 Show Data kanamycin (120min) / spectinmycin 5 ug/ml early log phase 120 min 14 Show Data ampicillin (60min) / spectinmycin 5 ug/ml early log phase 60 min 15 Show Data ampicillin (120) / spectinmycin 5 ug/ml early log phase 120 min

Herzberg,2006 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data tqsA tqsA::kan(deletion) Cells were grown in LB+glucose and RNA was extracted at OD600=5.

Haddadin,2005 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 8 Show Data isopropyl-1-thio-beta-D-galactopyranoside (IPTG) 5mM OD595=11.5 4 hrs MG1655(WT) exposed or not exposed to 5mM IPTG added at OD595=11.5 in LB for 4h were compared.

Mukhopadhyay,2004 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 5 Show Data norR norR::kan(deletion) Cultures were treated with 1mM GSNO. P1 transductions after deletion construction. 6 Show Data fur fur::kan(deletion) Cultures were treated with 1mM GSNO. P1 transductions after deletion construction. 7 Show Data oxyR oxyR::kan(deletion) Cultures were treated with 1mM GSNO. P1 transductions after deletion construction.

Peter,2004 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 8 Show Data norfloxacin 50ug/ml 10 min gyrAr/parCCr cells, publication indicates no changes in supercoiling, transcription profile changes due to unknown targets of antibiotic. 25 Show Data novobiocin 20 ug/ml 5 min 26 Show Data novobiocin 50 ug/ml 5 min 27 Show Data novobiocin 200 ug/ml 5 min

Bordi,2003 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 1 Show Data trimethylamine N-oxide (TMAO) 10mM OD=0.4-0.5 initially MC4100 in L-broth in presence or absence of TMAO gene experimental details: Exp ID Exp Data Gene name Allele Comments 3 Show Data torS pMCP13, constitutive torS allele(plasmid expression) pMCP3 vs pMCP13

Li,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data rnpA A49 to G(temperature sensitive) RNA was extracted 15 min post shift from 30C to 42C. 3 Show Data rnpA A49 to G(temperature sensitive) RNA was extracted 45 min post shift 30C to 42C.

Salmon,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data fnr deletion fnr mutant was compared to MC4100(WT) in anaerobic conditions.

Sabina,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 7 Show Data relA relA251::kan(deletion)

Hung,2002 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data lrp lrp35::Tn10(transposon insertion) lrp mutant was constructed in a ilvPG::lacZYA background. MOPS+0.4% glucose RNA was isolated from cells at an OD600=0.5-0.6.

Smulski,2001 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 1 Show Data Acivicin 2ug/ml continuous 60 min experiments were performed with minimal glucose media