Microarray Experiment Search Results for yaaH

21 total

Reference	Variable	Value    fold ratio ln log2	Experiments	Contact
White-Ziegler,2009	vs nonthermoregulated genes, 37/23, hns651	-9.3	Growth_3, Exp Data	White-Zeigler CA
Aberg,2009	dksA	4	Gene_2, Exp Data	Carlos Balsalobre
Traxler,2008	relA spoT	10.166	Gene_2, Exp Data	Tyrrell Conway
Traxler,2008	relA	6.586	Gene_3, Exp Data	Tyrrell Conway
Bradley,2007	fis	-2.17	Gene_1, Exp Data	Robert Osuna
Zhao,2005	rpoH	2.27	Gene_2, Exp Data	Richard R. Burgess
Peter,2004	norfloxacin	-2.272	Chemical_16, Exp Data	Brian J Peter
Peter,2004	norfloxacin	2.36	Chemical_13, Exp Data	Brian J Peter
Peter,2004	norfloxacin	2.041	Chemical_14, Exp Data	Brian J Peter
Peter,2004	novobiocin	2.461	Chemical_25, Exp Data	Brian J Peter
Peter,2004	novobiocin	5.922	Chemical_26, Exp Data	Brian J Peter
Peter,2004	novobiocin	2.68	Chemical_27, Exp Data	Brian J Peter
Peter,2004	37C vs 42C	2.39	Growth_28, Exp Data	Brian J Peter
Peter,2004	37C vs 42C	2.67	Growth_31, Exp Data	Brian J Peter
Peter,2004	gyrB	2.621	Gene_32, Exp Data	Brian J Peter
Peter,2004	gyrB	4.515	Gene_33, Exp Data	Brian J Peter
Peter,2004	gyrB	4.121	Gene_34, Exp Data	Brian J Peter
Peter,2004	gyrB	2.57	Gene_35, Exp Data	Brian J Peter
Li,2003	rnpA	2.2	Gene_1, Exp Data	Sidney Altman
Li,2003	rnpA	2.2	Gene_3, Exp Data	Sidney Altman
Courcelle,2001	WT vs mid-log phase	-2.174	Growth_6, Exp Data	Justin Courcelle

Experimental Details

White-Ziegler,2009 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 3 Show Data vs nonthermoregulated genes, 37/23, hns651 nonthermoregulated genes, 37/23, hns651

Aberg,2009 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data dksA

Traxler,2008 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data relA spoT deletion Cultures were grown in MOPS media containing low isoleucine (60uM). RNA was extracted at OD~0.8 (640 min). relAspoT/WT both in 60uM isoleucine. 3 Show Data relA deletion Cultures were grown in MOPS media containing low isoleucine (60uM). RNA was extracted at OD~0.8 (640 min). relA/WT both in 60uM isoleucine.

Bradley,2007 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data fis fis::kan(deletion) RNA extracted 90 minutes from MC1000(WT) and fis mutants.

Zhao,2005 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data rpoH pTet32 over expression plasmid (overexpression) MOPS + 0.1% glucose +0.66mM K2HPO4; RNA extracted 10 min post induction.

Peter,2004 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 16 Show Data norfloxacin 50 ug/ml 2 min gyrA+/parC+ 13 Show Data norfloxacin 15 ug/ml 10 min gyrA+/parCr 14 Show Data norfloxacin 15 ug/ml 20 min gyrA+/parCr 25 Show Data novobiocin 20 ug/ml 5 min 26 Show Data novobiocin 50 ug/ml 5 min 27 Show Data novobiocin 200 ug/ml 5 min growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 28 Show Data 37C vs 42C 42C steady 2 min gyrB+, served as a control for the gyrB ts experiments to ensure changes due to gyrB mutation, not temperature shift. 31 Show Data 37C vs 42C 42C steady 20 min gyrB+, served as a control for the gyrB ts experiments to ensure changes due to gyrB mutation, not temperature shift. gene experimental details: Exp ID Exp Data Gene name Allele Comments 32 Show Data gyrB gyrB ts(temperature sensitive) 42C for 2 minutes compared to gyrBts at 37C 33 Show Data gyrB gyrB ts(temperature sensitive) 42C for 5 minutes compared to gyrB ts at 37C 34 Show Data gyrB gyrB ts(temperature sensitive) 42C for 10 minutes compared to gyrB ts at 37C 35 Show Data gyrB gyrB ts(temperature sensitive) 42C for 20 minutes compared to gyrBts at 37C

Li,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data rnpA A49 to G(temperature sensitive, point mutation) At OD600=0.25 culture was shifted from 30C to 42C. 0min time point. 3 Show Data rnpA A49 to G(temperature sensitive) RNA was extracted 45 min post shift 30C to 42C.

Courcelle,2001 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 6 Show Data WT vs mid-log phase mid-log phase OD600=0.4 20 minutes Used as a control to monitor changes due to growth state independent of UV irradiation. Davis media+0.4% glucose.