Data for genes affected by
pH 5.7 vs pH 8.5
in
Hayes
,2006
609 total
Gene Name
Value
fold
ratio
ln
log2
Validated
Note
yagU
80.132
tnaC
-68.289
gcd
43.169
asr
35.707
tnaA
-35.385
yghG
-34.092
nmpC
-33.775
ycfS
-32.837
treB
-27.342
yjiY
-26.318
yeaR
23.39
yhcN
22.334
fliC
20.77
ybcV
-20.385
cadA
20.026
treC
-19.026
motB
17.211
yebE
-15.389
mqo
15.178
cpxP
-14.898
chaA
-14.563
galP
14.217
bsmA
-12.998
alx
-12.638
fumC
12.411
ydeT
-12.265
yjdA
12.089
yhdU
-12.044
flxA
11.659
fimA
11.58
tnaB
-11.431
mhpR
11.016
fimD
10.556
cheZ
10.519
ydiY
10.448
yjbE
-10.392
cfa
10.319
cadC
10.313
motA
10.306
spy
-10.084
wcaD
-9.936
yjfN
-9.863
efeO
9.81
tdcA
-9.701
yoaG
9.645
yhjX
9.308
fecB
-9.263
ygeN
-9.194
borD
-8.67
lysA
8.346
ansP
-8.255
yddK
-7.909
yeiH
7.828
yccA
-7.783
gatD
7.627
fimI
7.595
cirA
-7.42
purT
-7.417
yhjH
7.338
wcaE
-7.046
mltD
-7.028
ymgD
-7.002
ydeR
-6.966
cpsB
-6.581
yceJ
-6.499
raiA
-6.499
yncJ
-6.486
ydeH
-6.401
fimC
6.379
yedA
6.191
tar
6.016
yghF
-6.015
cheA
5.913
narG
5.842
tdcB
-5.835
efeB
5.788
ftnB
-5.731
nrdG
-5.675
yncD
5.588
nrdD
-5.581
ydeS
-5.476
eutP
-5.461
grxA
5.459
yiiS
5.4
fliD
5.354
dhaM
5.214
grcA
5.181
ydgD
5.153
yjcH
5.132
thrW
5.061
pppA
-4.855
entA
-4.851
ompF
-4.85
kgtP
4.836
yejG
4.829
ynfD
-4.812
cheW
4.801
clpB
4.747
tdcD
-4.731
hdeD
4.72
fadL
-4.708
fecA
-4.648
ychO
4.613
yhaB
-4.588
ivbL
-4.561
uspD
4.56
nemR
4.551
ymgG
-4.512
htpX
-4.49
gatC
4.483
ygeG
-4.457
ydhZ
-4.442
fliR
4.332
yhhI
4.326
aidB
4.319
rzpD
-4.299
gadE
4.295
ydcI
4.278
arnB
4.26
dhaL
4.255
yjgL
4.225
yeeD
4.192
bhsA
4.189
pdhR
4.143
eutQ
-4.117
ilvB
-4.1
ilvN
-4.09
ygiB
-4.08
rrrD
-4.071
tsr
4.06
xdhA
4.037
yjfZ
4.035
tdcR
-4.024
garL
-4.002
marA
3.989
malK
-3.983
yafE
3.98
yjiX
-3.957
fliT
3.954
purM
-3.949
ariR
3.948
yncH
-3.93
yjhG
3.895
yjiA
-3.87
glgS
-3.866
mdtG
3.863
yrhA
-3.847
idi
3.807
dhaK
3.728
ybaK
3.717
ymdA
3.71
sucA
3.71
gcvT
-3.696
fimF
3.684
sdhD
3.671
lamB
-3.663
quuD
-3.663
entH
-3.654
essD
-3.625
yehH
3.596
fliS
3.57
carA
-3.552
yigI
3.549
yafD
3.547
cspD
-3.543
ycgR
3.539
ygeI
-3.538
ygiC
-3.537
sdhC
3.531
pdxK
3.527
fimG
3.516
ycgB
3.513
cheB
3.508
crcB
3.503
prpD
3.495
ygjV
3.488
sucD
3.48
dadA
3.477
sdhB
3.47
fliH
3.468
yjdK
3.463
fecE
-3.452
bioF
-3.451
cstA
-3.451
pitA
-3.448
lysP
3.445
malT
-3.427
yhiL
3.421
gltB
3.42
ydiN
-3.413
nemA
3.412
csiE
-3.405
ygaZ
-3.403
araJ
3.384
rbsC
3.374
ydfR
-3.37
fumA
3.354
gatR
3.354
lysC
3.351
cheR
3.339
hisL
-3.337
yecR
3.332
ebgC
-3.324
ymdB
3.313
fdnI
3.313
ldhA
3.312
flgL
3.308
yjeM
3.295
srkA
-3.289
nlpA
3.287
adiY
3.263
yqaE
-3.26
rcdA
-3.257
wcaF
-3.256
yedR
3.25
fecD
-3.239
cysU
-3.228
ygaQ
-3.22
bioB
-3.219
yhaM
3.205
cysP
-3.163
yfdT
3.15
sdhA
3.15
yohJ
3.15
cadB
3.138
lipA
3.137
fumB
3.134
ymfQ
-3.121
fliK
3.105
xylH
-3.103
glyU
3.099
lldR
3.097
acpH
3.086
etp
3.086
nhaB
3.083
opgD
-3.08
spf
3.078
purH
-3.076
flgI
3.074
lldD
3.07
csgA
-3.063
dps
3.059
iap
3.055
asnA
-3.054
yhbW
3.046
tap
3.045
yagM
3.045
ahpF
3.034
xylF
-3.026
yafU
-3.023
rspB
3.019
argW
3.017
mzrA
-3.017
ygeH
-3.015
fimH
3.011
uspF
-3.01
garP
-3.007
yqjA
-2.998
yfeS
2.996
ygeF
2.993
agaB
2.985
ndh
2.965
emrB
2.963
ydaY
2.948
cpxR
-2.944
cusC
2.939
yobB
-2.935
yhaC
-2.933
yeeO
2.928
mntH
2.926
ychH
2.923
lldP
2.914
yahA
-2.912
mocA
-2.912
fliQ
2.911
codB
-2.906
narK
2.895
yadN
-2.894
bdm
-2.893
yicJ
2.89
atoD
2.887
ydfA
2.885
slt
-2.883
dsbA
-2.878
yihS
-2.877
yjcF
-2.875
flgF
2.87
hyfE
-2.87
aspA
-2.869
tgt
-2.869
flgK
2.868
mdaB
2.866
fliZ
2.856
aceF
2.854
sthA
2.85
hyi
-2.844
hisD
-2.841
cydA
-2.838
yigM
-2.832
acnB
2.81
rcsA
2.807
sucB
2.805
yceI
-2.805
alr
2.803
ygaH
-2.797
ygbE
2.797
yfcD
2.791
yjeN
2.783
ydiP
2.782
ybfP
2.782
yfaY
2.779
cysH
2.779
ymfJ
-2.775
fliJ
2.766
bioA
-2.765
yjhQ
-2.753
yqjC
-2.752
bssR
2.745
putA
-2.737
gcvH
-2.728
narH
2.723
flgH
2.719
htpG
2.717
hisC
-2.716
dadX
2.712
gatB
2.712
miaA
-2.707
yjbG
-2.7
yjbL
-2.692
argO
2.691
purL
-2.682
gmr
-2.674
gltS
-2.662
hisH
-2.652
pgaD
2.652
csgG
-2.647
purD
-2.646
paaE
-2.639
yraI
-2.638
yohC
-2.637
gabP
-2.635
fdnG
2.634
cheY
2.632
dnaJ
2.63
srlD
2.628
yaiY
-2.626
racC
-2.623
csgF
-2.621
gltD
2.616
flhE
2.613
emrA
2.611
entE
-2.611
torT
2.607
ydjO
-2.606
hflX
-2.606
gutQ
2.605
pyrL
-2.602
glpF
-2.598
deoC
2.594
cspI
-2.592
hdeA
2.592
pdxY
2.589
fliP
2.588
aaeA
2.582
mdtI
2.581
yqfE
2.577
cvpA
-2.574
yhjG
2.566
dmlA
2.562
rsmE
2.562
fecC
-2.559
speB
-2.559
yhjC
-2.559
phnC
-2.552
mutL
-2.55
hdeB
2.544
psuK
-2.539
yddL
-2.533
fliN
2.532
tomB
-2.531
ybgD
2.525
ygcU
2.509
fliO
2.505
metK
2.505
oppA
2.497
sucC
2.497
yciG
2.497
ybbM
2.496
ygbK
2.493
ynjH
2.492
aroP
2.489
hslJ
2.484
fes
-2.48
yhcO
2.48
sfmD
2.473
bax
-2.472
ytfK
-2.472
fliI
2.469
yjjQ
2.463
yibF
-2.455
yjdM
-2.454
thiF
2.449
deoA
2.447
sbp
-2.442
yeaQ
2.441
fxsA
2.44
csgD
-2.439
trpL
-2.437
pflD
2.434
tktB
2.433
clsB
2.433
glcC
2.432
xylR
-2.432
mokB
-2.43
proM
2.426
rnk
-2.422
aroG
2.418
fsr
2.415
pgpC
2.412
fliG
2.411
sdaB
-2.411
ylaC
2.411
sdaA
-2.405
gutM
2.404
entC
-2.403
dcuA
-2.4
allB
2.397
yggP
2.396
rbsA
2.395
aceE
2.394
yjdI
2.394
hscC
-2.392
flgG
2.387
ynfF
-2.386
ydeM
2.384
safA
-2.383
glpA
-2.379
fucP
-2.378
proP
2.376
rrlG
-2.362
yicG
-2.362
gss
2.361
add
2.355
xisE
-2.353
cyaA
2.353
groL
2.353
rrsG
-2.353
rrlC
-2.345
yfeK
2.345
yraK
-2.34
fepG
-2.339
ynbB
-2.338
dauA
2.335
aroH
2.334
ybbA
-2.328
ycjF
2.324
rimK
2.312
yjcD
-2.309
gatA
2.308
kbaY
2.307
nei
2.307
trkG
2.305
flhA
2.304
malM
-2.302
astC
2.3
yeaD
2.3
ykgI
-2.299
yeeE
2.297
proV
-2.292
fucI
-2.291
cysW
-2.281
ygaU
-2.28
yneJ
2.279
ygeK
2.276
fliM
2.274
icd
2.272
rrsA
-2.268
ybcN
-2.265
flgN
2.264
yeiB
2.264
acrR
-2.262
lon
2.262
yehB
-2.261
yeiR
2.261
tdcC
-2.255
ynaE
-2.254
serA
2.253
yjbI
-2.248
menF
2.246
yncE
-2.239
eaeH
-2.238
ves
2.237
rhsD
-2.228
glpC
-2.227
bioD
-2.221
gpr
2.216
ylbG
2.212
hemB
2.208
ssuA
-2.208
nfsA
2.203
gspF
-2.202
bioC
-2.198
yneE
2.197
ygiZ
-2.197
fliF
2.19
yghT
-2.19
hybF
2.184
cyoE
2.179
xanQ
-2.176
ybaY
2.172
yeeJ
2.17
ydgC
2.168
hsdS
2.161
dkgB
2.153
ttdR
2.153
yecC
2.151
carB
-2.144
can
2.141
yoaE
-2.138
tusB
2.134
yfiM
2.133
ygiS
2.13
oppF
2.13
ibpB
2.128
csgE
-2.122
fliL
2.121
yfcZ
2.12
narQ
-2.119
yfjP
-2.119
marB
2.114
uspC
2.111
xylA
-2.109
yehW
2.109
hslU
2.108
yadV
-2.107
yhaO
2.105
yhjY
2.102
glpB
-2.1
nhaA
-2.1
ridA
-2.1
hisG
-2.099
yadH
2.099
ydjK
2.097
nrdE
2.096
apbE
2.096
mcrC
2.094
ycbV
2.092
gltF
2.091
wcaG
-2.091
yjdN
-2.09
rbsD
2.09
srlE
2.088
nepI
2.085
norV
-2.084
yhaL
-2.084
sseA
-2.082
fliE
2.075
phnG
2.075
nhaR
-2.074
cydB
-2.073
rbsK
2.07
ygiW
2.069
ydeQ
-2.068
maa
-2.067
srlB
2.065
zwf
2.064
eutD
-2.062
narI
2.059
ybdH
2.059
frvA
-2.058
cysI
2.057
rrlE
-2.057
flgM
2.055
yibA
-2.055
yjcB
2.054
eutN
-2.052
fepA
-2.052
osmB
-2.05
ygfI
2.048
flgE
2.042
nirC
2.041
yghD
-2.039
ompX
2.038
ybiC
2.038
ycjP
2.035
casD
2.032
pagP
-2.032
argT
2.031
yafZ
2.031
ygiN
2.026
glpK
-2.023
preA
2.021
ymfE
-2.021
rrsH
-2.02
aegA
-2.019
rcnA
2.019
ybaL
-2.018
ytfJ
-2.016
rrlH
-2.015
marR
2.011
garK
-2.01
amyA
2.008
ycjX
2.008
pdxH
2.007
pgaB
-2.006
cysB
-2.005
ymfL
-2.004
mdtA
-2.003
pgaC
2.002
Copyright 2006 University of Miami.
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Copyright © 2005 by Francisco Burzi. This is free software, and you may redistribute it under the
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