Data for genes affected by
ampicillin (60min) / spectinmycin
in
Kohanski
,2007
951 total
Gene Name
Value
fold
ratio
ln
log2
Validated
Note
malK
42.578
lamB
29.051
malE
26.78
flgE
26.014
mqsR
-25.923
higB
-20.031
mqsA
-19.722
flgG
19.428
malM
19.283
yhaO
-17.957
flgF
17.678
groS
16
fliD
15.997
ycdZ
-15.541
cspF
-14.678
cspG
-14.651
relE
-14.641
cpxP
14.607
treC
14.054
relB
-13.707
cysD
13.203
aroM
-13.147
flgB
12.723
cysJ
12.428
yhaM
-12.044
flgD
11.983
fliK
11.953
yebF
-11.899
puuD
-11.72
fliM
11.561
yahA
-11.398
fliL
10.901
rttR
-10.858
puuR
-10.777
bssS
-10.756
nuoH
10.624
yeeD
10.597
cspB
-10.496
nuoF
10.302
yhbE
-9.844
mdtJ
-9.835
yjhX
-9.767
cysI
9.759
cysK
9.749
nuoE
9.476
flgH
9.446
ydjF
-9.426
flgI
9.41
ycdT
-9.376
nuoC
9.327
aceA
9.272
nuoI
9.241
speD
9.161
nuoL
9.095
maa
-8.757
nuoG
8.714
glcD
8.638
cdd
-8.633
cspH
-8.594
aceB
8.519
yeeE
8.515
cysH
8.412
yagU
-8.371
mdtI
-8.329
yebG
-8.302
tar
8.193
sulA
-8.153
groL
8.13
treB
7.952
tnaA
7.849
ygeQ
-7.787
raiA
7.783
pflB
7.779
flgC
7.723
ydeT
-7.709
nuoK
7.706
yejG
-7.644
flgA
7.621
arfA
-7.575
fruB
-7.461
cysN
7.411
fliN
7.4
fliS
7.383
hokD
-7.345
glpK
7.312
tisB
-7.266
fruK
-7.266
hslV
7.255
ydjE
-7.215
cheY
7.121
ydgK
-7.101
fliI
7.082
fliJ
6.904
stpA
-6.903
cysP
6.877
csrC
6.818
nuoJ
6.802
malF
6.733
pheM
-6.73
iscR
-6.71
fliG
6.707
gtrB
6.589
fliZ
6.582
fliH
6.557
sdiA
-6.543
obgE
-6.526
yedW
-6.461
zapC
-6.443
malP
6.423
sucB
6.42
sucA
6.416
grcA
6.398
tomB
-6.396
atpA
6.379
puuA
-6.319
yfdY
-6.273
mdfA
-6.235
higA
-6.22
cheB
6.178
cnu
-6.177
ydfA
-6.147
yeiS
-6.139
ynaJ
-6.137
rbsB
6.112
gntK
-5.941
fliA
5.938
pabC
-5.904
cheZ
5.836
yfhL
-5.833
ydeS
-5.825
glcG
5.794
blr
-5.687
cysC
5.673
sthA
5.634
nrdA
5.489
aceE
5.475
lldP
-5.466
fliF
5.42
uspG
-5.33
gsiA
5.306
yjhQ
-5.305
cheW
5.297
ybjM
-5.284
ychH
-5.283
yneM
-5.272
cyoD
5.272
yefM
-5.265
glcB
5.262
rdlA
-5.258
pgaC
-5.257
ydhI
-5.231
nudE
-5.206
flgJ
5.181
umuD
-5.176
cobU
-5.162
ompC
5.138
ynbB
-5.101
ihfB
-5.087
cyoB
5.087
nuoN
5.057
hslU
5.055
ruvA
-5.052
hha
-5.041
glpC
5.02
nuoM
5.003
sanA
-4.998
proX
4.994
speE
4.989
cyaR
-4.986
glcC
-4.935
fliE
4.923
cyoC
4.9
ryjB
-4.839
sucC
4.838
dnaK
4.829
yafQ
-4.818
rbsC
4.792
yecR
4.759
mdtK
-4.757
malG
4.755
ydjM
-4.744
serT
-4.734
sodA
4.73
fliO
4.721
fliP
4.714
pgaD
-4.706
aceF
4.7
tap
4.663
mcbR
-4.66
fliC
4.656
yffS
-4.655
rem
-4.648
rcsA
-4.583
frmR
-4.563
dppA
4.549
dinI
-4.518
pspC
-4.509
atpD
4.506
cysU
4.484
yafN
-4.48
smrA
-4.474
atpG
4.468
yedV
-4.449
ispU
-4.433
yciY
-4.423
atpH
4.419
ycaI
-4.41
cdsA
-4.407
flgK
4.404
sucD
4.393
ycdU
-4.384
tyrT
-4.377
yjaH
-4.376
rsxA
-4.371
malX
-4.355
gcvH
4.344
erpA
-4.342
ycgZ
-4.339
waaL
4.32
hscB
-4.317
iraP
-4.286
tnaC
4.246
sixA
-4.237
yeeZ
-4.235
ybcW
-4.203
mazF
-4.2
ybbC
-4.192
focA
4.168
glpB
4.153
cysW
4.153
glpF
4.139
flgL
4.137
atpC
4.134
soxS
-4.126
ybjX
-4.112
aroF
-4.026
iscS
-4.022
galP
-4.016
glcF
4.01
yciU
-4.009
ymgC
-4.004
mazE
-4.001
gntT
-3.998
recX
-3.99
recA
-3.986
dhaK
-3.98
sibC
-3.978
fruA
-3.967
ymdA
3.958
yecF
-3.957
gntU
-3.955
gfcA
-3.948
xerC
3.947
flhD
-3.942
yoeB
-3.934
yceG
-3.932
idnK
-3.931
ibpA
3.927
yhaV
-3.921
fliT
3.914
ygiC
3.914
yfeS
-3.889
flgM
3.873
ryfA
-3.845
ychA
-3.835
yihY
3.823
yjcH
3.812
yccA
3.808
tyrP
-3.804
ybjG
-3.797
pepD
3.784
yciH
-3.779
nrdB
3.77
deoD
3.769
nsrR
-3.764
ybfE
-3.724
yjhI
-3.712
sieB
-3.707
yegR
-3.697
iscA
-3.686
prlF
-3.684
yagK
-3.673
cyoE
3.672
tadA
-3.665
grxA
-3.646
matP
-3.637
ycfS
3.631
ygiB
3.62
htpG
3.607
yjhE
-3.605
secE
-3.603
phoA
-3.601
torR
-3.578
tusA
-3.574
ilvG
-3.552
cheA
3.544
yobA
-3.533
ompX
-3.529
infA
-3.524
ydcX
-3.524
ybcY
-3.522
ycjW
-3.521
hipB
-3.512
ybhD
-3.505
pspB
-3.501
rhsD
-3.499
ydcN
-3.495
leuE
-3.493
iscU
-3.492
dsbB
-3.49
yegZ
-3.49
frmA
-3.481
rlmF
-3.451
psiF
-3.444
rimP
-3.44
yfbV
-3.437
recN
-3.434
ybeY
3.432
pdxA
3.429
spoT
3.423
ydgC
-3.42
flhC
-3.413
ygdH
3.41
fbaA
3.403
cysA
3.395
ogrK
-3.373
cheR
3.368
ynjI
-3.362
mntH
-3.357
waaF
3.357
ydeR
-3.352
ydiV
-3.347
rnlA
-3.343
yciX
-3.335
yebZ
-3.329
amn
3.329
malY
-3.31
dld
3.308
uhpT
3.294
ycjM
-3.285
yebW
-3.275
dppD
3.275
acs
3.275
yjhP
-3.27
thyA
3.27
marR
-3.263
nusG
-3.259
pgi
3.259
eno
3.259
yjiY
-3.257
yfgO
-3.251
nanA
-3.246
ydcP
-3.243
zipA
-3.241
fadD
-3.235
opgG
3.233
ruvB
-3.217
ariR
-3.21
lsrR
-3.208
dsbA
3.202
rplS
-3.196
mntR
-3.193
ykiA
-3.182
oxyS
-3.182
yfcO
-3.18
ynaK
-3.175
yagI
-3.174
ynaI
-3.17
ribB
3.156
gstA
-3.152
mtlR
-3.15
atpF
3.148
atpB
3.147
bcsQ
-3.146
yfbP
-3.135
fabF
-3.133
talB
3.13
apaG
3.129
pyrF
-3.125
chbG
-3.123
waaC
3.112
hlyE
-3.111
znuB
-3.111
spf
-3.105
malI
-3.101
lpxC
-3.098
yoaC
-3.092
ylcH
-3.087
dinJ
-3.083
gfcC
-3.083
purR
-3.083
cmk
-3.081
pppA
-3.079
xapR
-3.078
asd
3.076
yneO
-3.074
rpmG
-3.069
yigB
3.063
hsdS
3.056
ytfA
-3.054
mtlD
-3.042
yagN
3.034
yegJ
-3.029
yddM
-3.028
clsA
-3.026
murQ
-3.017
ppk
3.016
bamE
-3.009
sbp
3.006
rbfA
-3.005
hicA
-3.001
glyQ
2.996
ytfK
2.994
rutR
-2.993
yegQ
-2.993
iaaA
2.991
infB
-2.989
carA
2.977
zntR
-2.975
ppc
2.974
ymgD
-2.972
acuI
2.97
gcvT
2.97
asnB
2.969
rlmA
-2.957
yhjR
-2.951
surA
2.939
yfeK
-2.936
yiaD
2.921
ymcE
-2.919
bdm
2.919
yceI
2.904
fimA
2.9
sxy
-2.899
mraZ
-2.898
yjhB
-2.888
gfcB
-2.886
mioC
-2.883
lldR
-2.882
yadC
-2.881
yhdN
-2.877
yjeJ
-2.877
uvrB
-2.876
secM
2.876
mngR
-2.87
yniB
-2.867
ycgM
-2.86
ydaY
-2.857
yjhD
-2.852
emrY
-2.852
ycgH
-2.851
gpt
-2.85
deoC
-2.845
ybeZ
2.841
potD
2.835
tmk
-2.834
ydeN
2.834
ttcA
-2.833
soxR
-2.818
bcp
2.817
yafP
-2.813
ylaC
-2.811
ycgL
-2.809
queD
-2.807
yedE
2.803
gcvP
2.798
ydjJ
-2.797
sibB
-2.796
ybdH
-2.794
pgaB
-2.793
yeeY
-2.792
yqeC
-2.789
fliQ
2.786
thrL
-2.782
nrdD
2.782
mntP
-2.778
yebO
-2.775
osmC
-2.768
sra
2.763
flgN
2.762
rne
2.761
ahpF
-2.76
fucR
2.751
artI
2.749
ynaA
-2.744
murE
2.744
ybdJ
-2.739
glpA
2.735
rbsA
2.729
yiaB
-2.727
ydcI
-2.726
marA
-2.725
typA
-2.72
atpE
2.718
ghrB
2.717
aroL
-2.715
rcnR
-2.706
rluC
-2.705
wbbH
-2.702
ybhM
-2.7
nemA
-2.699
hipA
-2.698
cohE
-2.698
pstB
2.698
secA
2.694
glnP
2.693
lysS
2.688
norR
-2.685
fur
-2.673
borD
-2.668
micA
-2.665
hchA
-2.659
ybfG
-2.658
rlmI
-2.658
yigA
2.657
tolC
2.654
folA
-2.649
carB
2.649
yfgG
2.647
gnsA
-2.646
yafK
-2.643
rlpA
2.643
hrpB
-2.64
dacA
2.638
secB
2.637
gtrS
2.636
yfcV
-2.635
lrhA
-2.63
ydhR
-2.629
actP
2.628
malQ
2.627
potC
2.623
leuA
-2.622
glyA
2.622
lgt
2.622
puuC
-2.621
pspA
-2.621
mgtA
-2.618
sbmC
-2.617
insJ
-2.61
dppB
2.609
ybjD
-2.605
glpX
2.604
ydjL
-2.603
ydjG
-2.595
yedF
2.592
eptC
2.591
tonB
-2.589
yzgL
-2.589
hsdR
2.588
ftsL
-2.586
znuC
-2.579
dinQ
-2.577
nemR
-2.577
yiiX
-2.575
ypeA
-2.571
yhbJ
2.566
aceK
2.561
inaA
-2.56
deoR
-2.56
ynfC
-2.559
gltB
2.558
hpf
2.556
ygeO
-2.554
yhdZ
2.551
yjcZ
2.551
uspF
-2.548
yffB
-2.547
ykgI
-2.545
napF
2.544
lpxK
-2.539
ymgA
-2.535
dtd
2.534
glf
-2.529
ftnB
-2.527
uidC
-2.522
cyoA
2.522
gsiC
2.513
ykfB
2.513
cobT
-2.51
ptsA
2.509
rlmL
-2.507
glnQ
2.507
preT
-2.506
betI
-2.506
yfeN
-2.505
msbA
-2.505
hdhA
-2.502
dapB
2.502
artM
2.501
ydfR
-2.498
rfbC
-2.496
uup
-2.491
ydhZ
-2.491
glnD
2.491
truB
-2.488
umuC
-2.486
maeB
2.486
ybaQ
-2.485
dusC
-2.482
chaC
-2.48
yraN
2.476
recR
2.474
rseP
-2.472
udp
-2.471
rbsK
2.47
yjeO
-2.469
hemY
2.469
wzxB
-2.465
rfaH
-2.464
yfcI
-2.463
lhgO
2.462
yegW
-2.459
cobS
-2.458
yhbU
2.458
arsC
2.457
pgk
2.456
yjaA
-2.455
intB
-2.452
nagC
2.452
yaiA
-2.446
glnA
2.445
gpsA
2.442
bhsA
-2.441
glyS
2.441
cpxR
2.441
bax
2.437
pepN
2.437
rhlB
2.437
hsdM
2.436
yciB
-2.434
aqpZ
-2.429
napD
2.429
ppsA
2.428
glmS
2.421
selB
2.42
yeaJ
-2.416
psd
2.415
narK
2.406
ydfI
-2.404
rnc
-2.403
rpmB
-2.403
chbB
-2.401
tpiA
2.401
ybcM
-2.4
gcvA
-2.4
yibB
-2.399
nlpI
-2.397
rof
-2.397
tyrB
2.397
iscX
-2.393
nusA
-2.392
omrB
2.392
tktA
2.388
ybhQ
-2.385
rcnA
-2.385
mrdB
2.38
yifL
2.378
ypfN
-2.376
rpiB
-2.373
yfiR
-2.373
dnaJ
2.373
mlaF
-2.372
yafO
-2.372
gph
2.371
rnlB
-2.37
ptsP
2.37
ycgJ
-2.362
waaQ
-2.36
murF
2.36
fabA
-2.359
sibD
-2.356
pykA
2.351
ydjI
-2.347
dppC
2.347
rsxB
-2.346
yadL
-2.342
hisF
2.341
nanC
-2.335
mglB
-2.333
yrhB
-2.329
ydaG
-2.329
yohO
-2.326
malT
2.325
qmcA
-2.314
yedZ
-2.313
cysM
2.31
glnH
2.305
dacC
-2.304
gcvR
2.303
cycA
-2.302
ybcI
-2.3
hisA
2.3
tnaB
2.299
manA
2.296
gapA
2.295
slyX
-2.294
rpoE
-2.293
yjiA
2.29
ybaB
2.286
artQ
2.286
ycaQ
-2.284
rlmN
-2.283
miaA
2.281
nrdR
-2.277
tyrA
-2.274
yciT
-2.273
tsx
-2.273
ridA
2.273
djlC
-2.272
pinH
-2.268
msrA
2.268
npr
2.268
ecnA
-2.266
srlA
-2.265
ydcY
-2.265
yhiI
-2.264
lexA
-2.26
ydcD
-2.259
lysQ
-2.259
bamA
-2.259
ydhB
-2.259
mraY
2.258
ydiJ
2.258
fbp
2.256
valT
-2.255
waaP
-2.255
nanM
-2.248
ftsH
-2.245
yhhX
2.244
pqiA
-2.243
ybaT
-2.242
fkpA
2.242
pykF
2.241
exuT
-2.239
lpoA
2.238
dhaL
-2.236
argS
-2.236
emrD
-2.236
csdA
-2.232
yeeN
2.231
mppA
-2.225
yjeM
-2.224
thiM
-2.223
hisH
2.221
ydjK
-2.219
yqeG
2.219
rsfS
-2.213
hemX
2.213
mcrC
2.205
ynfA
-2.201
rnd
-2.201
omrA
2.199
opgH
2.198
cbl
2.198
rpoB
2.197
yheT
2.194
dicC
-2.193
yhgF
2.192
aroA
2.191
rpe
2.191
yfiF
-2.19
pdhR
2.19
grxC
2.187
osmY
2.186
argT
-2.185
mgrB
-2.18
glmY
2.18
pspD
-2.179
artP
2.178
torI
-2.177
dsbD
2.177
yjhC
-2.176
emtA
-2.176
exuR
-2.173
tusB
2.173
yahB
-2.172
ppa
2.17
pheL
2.169
mrr
-2.167
galT
2.167
intA
2.166
kdsA
-2.165
psuK
-2.165
glpE
-2.164
ppx
2.164
rlmC
-2.163
ytfJ
2.163
ytjC
-2.159
nikA
2.159
rbsR
2.159
asnA
2.157
secG
-2.156
micC
-2.153
hinT
-2.153
insB1
-2.15
ppsR
2.148
iap
-2.147
fsaB
2.147
fxsA
2.147
rsmA
2.145
rfbD
-2.144
ybaO
-2.141
ydeH
-2.141
lon
2.141
trkG
-2.139
mazG
-2.139
yeaC
-2.138
rsd
2.138
cutA
2.136
yjdA
2.136
yccF
-2.135
fadB
2.135
frwC
2.134
yodC
-2.13
insP
2.129
tqsA
-2.128
aspT
2.128
mcrA
-2.127
ydaN
-2.127
dapD
2.126
phnD
2.125
gsiB
2.124
gltS
-2.123
rihA
2.123
rpoH
-2.122
fecR
2.122
araC
-2.121
ycgN
-2.12
fklB
2.12
rpiR
-2.118
gyrB
2.118
nuoB
2.117
ryeA
-2.113
yibF
2.112
yebE
-2.111
gltA
2.11
mltA
-2.109
nhaR
-2.108
hemA
-2.108
ygiS
-2.106
bluR
-2.106
insK
-2.106
csrB
2.106
hypB
2.106
yebY
-2.105
dacD
-2.104
yfeD
-2.103
fliY
2.103
nfsA
2.103
dppF
2.103
ilvM
-2.101
wecB
2.101
pgrR
-2.1
mcrB
2.1
ydhJ
-2.093
dinG
-2.091
tolA
-2.088
waaM
-2.085
yghJ
-2.083
yajQ
-2.08
cspI
-2.078
csgG
-2.077
rpsT
-2.074
nfrB
-2.071
ydbD
-2.071
priC
-2.069
folX
-2.069
ygdQ
-2.068
minC
-2.068
ydiY
-2.067
ybjH
-2.066
ybdD
-2.066
ybfB
-2.066
ydfO
-2.057
ybhK
-2.057
yfeY
-2.056
hns
-2.055
yedR
-2.054
fdx
-2.05
rhlE
-2.047
ycbJ
-2.047
ycaK
-2.045
ydfB
-2.04
yahM
-2.037
cfa
-2.035
ybhA
-2.033
rfbA
-2.031
tolR
-2.027
ucpA
-2.026
fadE
-2.023
metN
-2.017
yeeW
-2.01
narX
-2.008
nlpC
-2.007
sokA
-2.004
ais
-2.003
dapE
-2.002
ribF
-2.001
argA
-2
trxC
-2
rsmH
-2
rluD
-2
prfA
-2
tsr
2
fumA
2
eptB
2
yjjB
2
feoA
2
yghA
2
hypA
2
hdfR
2
pmbA
2
yihT
2
yhfU
2
ybeX
2
pyrB
2
phoU
2
gcl
2
pck
2
ygbE
2
rstB
2
yecE
2
aldB
2
tsaA
2
rraB
2
trpS
2
srlB
2
frwB
2
lyxK
2
yihQ
2
glgB
2
frdC
2
ecpC
2
ydjN
2
nupC
2
dkgA
2
yjjY
2
gpp
2
glgA
2
flhA
2
hslR
2
mdh
2
pka
2
ibpB
2
rpoN
2
guaA
2
metG
2
lysU
2
yjcS
2
serC
2
Copyright 2006 University of Miami.
PHP-Nuke
Copyright © 2005 by Francisco Burzi. This is free software, and you may redistribute it under the
GPL
. PHP-Nuke comes with absolutely no warranty, for details, see the
license
.
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