Escherichia coli K-12 GenePage Master Page of nmpC
GenePage for the
nmpC'
pseudogene
of
Escherichia coli
K-12
Bacteriome: nmpC
CDD-COG: COG3203
CGSC: CG447
ChemGen Gene Correlations: nmpC
ChemGen Growth Data: nmpC
CMR: P21420
Colibri: nmpC
COMBREX: 946786
DDBJ: AAC73654
Doodle: b0553
ECDC: CG01128
EchoBASE: EB0653
EchoLOCATION: EB0653
ECID: P21420
ECMDB: P21420
EcoliWiki: nmpC
eggNOG: P21420
EMBL: AAC73654
eSOL: JW5078
Gene-Profiles.org: nmpC
Genevestigator: P21420
GenExpDB: b0553
GenoBaseMG: b0553
Genome3D: P21420
GenomeReviews: P21420
GenPept-GenBank: AAC73654
GenProtEC: b0553
GORBI: 946786
GREMLIN: P21420
iHOP: 946786
iProClass: P21420
iRefWeb: 946786
Membranome: NMPC_ECOLI
MicrobesOnline: P21420
MiST: 1581838
ModBase: P21420
OMA: P21420
Orthology.org: 56968
PairsDB: P21420
PDB-UniProt: P21420
Pedant: 4296
PrFEct-Predict: nmpC
ProDom: P21420
ProteomeFolding at YRC: P21420
ProtMap_COG: COG3203#NC_000913
ProtoNet: P21420
QUARK: E12346
QuickGO: P21420
RegulonDB-TU: ECK120014583
STRING: b0553
SWISS-2D: P21420
TCDB: P21420&tc=1.B.1.1.4
TCDB_Fam: 1.B.1
Transimulation: b0553
Unison: P21420
wikigenes: 946786
WolframAlpha: nmpC
xbase-ColiBASE: b0553
Primary Gene Name:
nmpC'
EcoGene Accession Number: EG10659
K-12 Gene Accession Number: ECK0544
MG1655 Gene Identifier:
b0553
DLP12 prophage
Interrupted Pseudogenes
Non-Core
Prophages
Pseudogenes
Reconstructed Pseudogenes
Signal Peptide Proteins
Verified Set
Verified Type I Signal Peptide Cleavages
Gene Name Mnemonic: New membrane protein
Alternate Gene Symbols: phmA
DNA Sequence
  # bp Upstream
# bp Downstream
Description:
Pseudogene reconstruction, OM porin, DLP12 prophage; interrupted by IS5B
Pre-Run BlastP UniProt
Protein Sequence
------------ MW: 40302.38------365 aa ------------
Pre-Run BlastP NR+Env
Genomic Address
Left End: 574529 ----------------- Counterclockwise ----------------- Right End: 576825
Left Inter Gene Info
Minute or Centisome (%) = 12.38
Right Inter Gene Info
 
gene or min(Cs)
PDF EcoMap
Curator or user-submitted Comments:
IS5B inserted at codon 347, causing a four base pair target site duplication TTAG and a C-terminal fusion ORF that is not expressed. The original, pre-insertion C-terminus is reconstructed, with KALGVSTDDIVAVGLVYQF replacing the IS5-encoded C-terminus KEGANKSLI. A 160 bp nmpC 3'-UTR is predicted to contain a predicted rho-indpendent terminator. 3'-UTR may contain ipeX sRNA (Castillo-Keller, 2006). nmpC mRNA and the putative ipeX downstream sRNA are silent in K-12. Overproduced ipeX RNA posttranslationally inhibits ompC and ompF.
Copyright 2006 University of Miami.
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