Escherichia coli K-12 GenePage Master Page of cydA
GenePage for the
cydA
gene of
Escherichia coli
K-12
Bacteriome: cydA
CDD-COG: COG1271
CGSC: CG10369
ChemGen Gene Correlations: cydA
ChemGen Growth Data: cydA
CMR: P0ABJ9
Colibri: cydA
COMBREX: 945341
DDBJ: AAC73827
Doodle: b0733
ECDC: CG00270
EchoBASE: EB0170
EchoLOCATION: EB0170
ECID: P0ABJ9
ECMDB: P0ABJ9
EcoliWiki: cydA
eggNOG: P0ABJ9
EMBL: AAC73827
ENZYME: 1.9.3.-
eSOL: JW0722
Gene-Profiles.org: cydA
Genevestigator: P0ABJ9
GenExpDB: b0733
GenoBaseMG: b0733
Genome3D: P0ABJ9
GenomeReviews: P0ABJ9
GenPept-GenBank: AAC73827
GenPept-RefSeq: NP_415261.2
GenProtEC: b0733
GORBI: 945341
GREMLIN: P0ABJ9
iHOP: 945341
Inparanoid: NP_415261.2
iProClass: P0ABJ9
iRefWeb: 945341
Membranome: CYDA_ECOLI
MicrobesOnline: P0ABJ9
MiST: 1582014
ModBase: P0ABJ9
OMA: P0ABJ9
Orthology.org: 1416
PairsDB: P0ABJ9
PATRIC: 32116663
PDB-UniProt: P0ABJ9
Pedant: 2066
Predicted Regulons: E594
PrFEct-Predict: cydA
ProDom: P0ABJ9
ProteinOntology: 000022361
ProteomeFolding at YRC: P0ABJ9
ProtMap_COG: COG1271#NC_000913
ProtoNet: P0ABJ9
QUARK: E11223
QuickGO: P0ABJ9
RegTransBase: 8801684
RegulonDB-TU: ECK120014458
STRING: b0733
SWISS-2D: P0ABJ9
TF Binding Sites: cydA.html
TIGR-CMR: NT01EC0904
Transimulation: b0733
Unison: P0ABJ9
wikigenes: 945341
WolframAlpha: cydA
xbase-ColiBASE: b0733
Primary Gene Name:
cydA
EcoGene Accession Number: EG10173
K-12 Gene Accession Number: ECK0721
MG1655 Gene Identifier:
b0733
34 Active Assayable Promoters
AUG Start Codons
Common Core
CommonCore-5
Curved Promoters
Essential Genes
IMemProt_Ei
InnerMemProt
Predicted Regulons McCue 2002
Verified Set
Verified Translation Starts (no Met)
Verified Translation Starts Sites
Gene Name Mnemonic: Cytochrome d
Alternate Gene Symbols: None
DNA Sequence
  # bp Upstream
# bp Downstream
Description:
Cytochrome d (bd-I) ubiquinol oxidase subunit 1; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by FNR
Pre-Run BlastP UniProt
Protein Sequence
------------ MW: 58205.08------522 aa ------------
Pre-Run BlastP NR+Env
Genomic Address
Left End: 771458 ----------------- Clockwise ----------------- Right End: 773026
Left Inter Gene Info
Minute or Centisome (%) = 16.63
Right Inter Gene Info
 
gene or min(Cs)
PDF EcoMap
Curator or user-submitted Comments:
H-NS, FNR and ArcA regulons. ArcA-P antagonizes H-NS repression of cydAB in response to limiting oxygen. Biofilm microarray result was validated with RT-PCR. HT_Cmplx29_Mem: CbdA+CydA.
Copyright 2006 University of Miami.
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