Microarray Experiment Search Results for insK

19 total

Reference	Variable	Value    fold ratio ln log2	Experiments	Contact
Glover,2009	classic colonies vs L-form colonies	18.7	Growth_1, Exp Data	Ying Zhang
Sabina,2003	relA	7.7	Gene_7, Exp Data	Robert A. LaRossa
Quillardet,2003	lexA	5.28	Gene_3, Exp Data	Philippe Quillardet
Ito,2008	rpoS	-4.701	Gene_1, Exp Data	Satoshi Okabe
Sabina,2003	relA	4.7	Gene_5, Exp Data	Robert A. LaRossa
Sabina,2003	relA	-3.448	Gene_8, Exp Data	Robert A. LaRossa
Domka,2006	bssR	3.365	Gene_1, Exp Data	Thomas K. Wood
Li,2003	rnpA	3	Gene_2, Exp Data	Sidney Altman
Hung,2002	lrp	-2.71	Gene_1, Exp Data	G. Wesley Hatfield
Ito,2008	WT exponential vs WT stationary	2.693	Growth_5, Exp Data	Satoshi Okabe
Kohanski,2007	kanamycin (30min) / spectinmycin	-2.69	Chemical_16, Exp Data	James J. Collins
Ito,2008	WT exponential vs WT biofilm	2.354	Growth_4, Exp Data	Satoshi Okabe
Li,2003	rnpA	2.2	Gene_3, Exp Data	Sidney Altman
Kohanski,2007	kanamycin (60min) / spectinmycin	-2.135	Chemical_17, Exp Data	James J. Collins
Kohanski,2007	ampicillin (60min) / spectinmycin	-2.106	Chemical_14, Exp Data	James J. Collins
Khankal,2009	glucose	2.1	Chemical_1, Exp Data	Patrick C Cirino
Stoebel,2009	rpoS+3 WT evolved strain	2.085	Gene_4, Exp Data	Charles J. Dorman
Stoebel,2009	rpoS+2 WT evolved strain	2.042	Gene_3, Exp Data	Charles J. Dorman
Stoebel,2009	rpoS+4 wt evolved strain	2.027	Gene_5, Exp Data	Charles J. Dorman

Experimental Details

Khankal,2009 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 1 Show Data glucose 0.4% Supplemented LB medium OD600=0.5 Differential expression of wild-type E. coli (W3110) genes in response to the presence of 0.4% glucose in LB. (WT G/WT)

Stoebel,2009 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 3 Show Data rpoS+2 WT evolved strain rpoS+2 4 Show Data rpoS+3 WT evolved strain rpoS+3 5 Show Data rpoS+4 wt evolved strain rpoS+4

Glover,2009 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data classic colonies vs L-form colonies L-form colonies

Ito,2008 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 4 Show Data WT exponential vs WT biofilm WT biofilm 5 Show Data WT exponential vs WT stationary WT stationary gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data rpoS rpoS::kan(deletion)

Kohanski,2007 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 16 Show Data kanamycin (30min) / spectinmycin 5 ug/ml early log phase 30 min 17 Show Data kanamycin (60min) / spectinmycin 5 ug/ml early log phase 60 min 14 Show Data ampicillin (60min) / spectinmycin 5 ug/ml early log phase 60 min

Domka,2006 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data bssR KO LB w/ glucose, glass wool (biofilm cells processed only for array analysis), compared to WT

Li,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data rnpA A49 to G(temperature sensitive) RNA was extracted 15 min post shift from 30C to 42C. 3 Show Data rnpA A49 to G(temperature sensitive) RNA was extracted 45 min post shift 30C to 42C.

Sabina,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 5 Show Data relA relA251::kan(deletion) 7 Show Data relA relA251::kan(deletion) 8 Show Data relA relA251::kan(deletion)

Quillardet,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 3 Show Data lexA lexA::Tn5(insertion) Cultures(WT and mutant) were exposed to UV at OD600=0.5, RNA was extracted 30 min post exposure.

Hung,2002 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data lrp lrp35::Tn10(transposon insertion) lrp mutant was constructed in a ilvPG::lacZYA background. MOPS+0.4% glucose RNA was isolated from cells at an OD600=0.5-0.6.