Microarray Experiment Search Results for rpoZ

19 total

Reference	Variable	Value    fold ratio ln log2	Experiments	Contact
Ito,2008	WT exponential vs WT biofilm	-4.179	Growth_4, Exp Data	Satoshi Okabe
Shimizu,2005	cyclohexane:p-xylene (6:4 (v/v))	-3.84	Chemical_5, Exp Data	Hiroyuki Honda
Gutierrez-Ríos,2003	mid log vs stationary	3.743	Growth_2, Exp Data	Julio Collado-Vides
Salmon,2003	aerobic vs anaerobic	-2.96	Growth_1, Exp Data	G. Wesley Hatfield
Mukhopadhyay,2004	nitrosylated glutathione (GSNO)	-2.941	Chemical_2, Exp Data	Gisela Storz
Robbins-Manke,2005	dam	2.829	Gene_1, Exp Data	John M. Essigmann
Mukhopadhyay,2004	sodium nitrite (NaNO2)	-2.778	Chemical_4, Exp Data	Gisela Storz
Kabir,2004	- NH4Cl (Ammonium Chloride) vs +NH4Cl (Ammonium Chloride)	-2.702	Growth_3, Exp Data	Mamoru Yamada
Ito,2008	rpoS	2.509	Gene_1, Exp Data	Satoshi Okabe
Zoetendal,2008	A. mearnsii (black wattle) tannin extract (WTE)	-2.5	Chemical_1, Exp Data	Alexandra H. Smith
Igarashi,2006	putrescine	2.43	Chemical_1, Exp Data	Kazuei Igarashi
Domka,2006	bssR	-2.39	Gene_1, Exp Data	Thomas K. Wood
Gutierrez-Ríos,2003	aerobic vs anaerobic (sealed flask)	2.248	Growth_3, Exp Data	Julio Collado-Vides
Ito,2008	WT exponential vs WT stationary	-2.244	Growth_5, Exp Data	Satoshi Okabe
Shimizu,2005	cyclohexane:p-xylene (6:4 (v/v))	-2.054	Chemical_2, Exp Data	Hiroyuki Honda
Stoebel,2009	rpoS+4 wt evolved strain	2.039	Gene_5, Exp Data	Charles J. Dorman
Stoebel,2009	rpoS+3 WT evolved strain	2.038	Gene_4, Exp Data	Charles J. Dorman
Stoebel,2009	rpoS+2 WT evolved strain	2.028	Gene_3, Exp Data	Charles J. Dorman
Shimizu,2005	cyclohexane:p-xylene (6:4 (v/v))	-2	Chemical_4, Exp Data	Hiroyuki Honda

Experimental Details

Stoebel,2009 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 3 Show Data rpoS+2 WT evolved strain rpoS+2 4 Show Data rpoS+3 WT evolved strain rpoS+3 5 Show Data rpoS+4 wt evolved strain rpoS+4

Ito,2008 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 4 Show Data WT exponential vs WT biofilm WT biofilm 5 Show Data WT exponential vs WT stationary WT stationary gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data rpoS rpoS::kan(deletion)

Zoetendal,2008 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 1 Show Data A. mearnsii (black wattle) tannin extract (WTE) 1 % OD600~=0.2 Cultures were grown anaerobically at 37 degrees C in MOPS medium with 0.4% glucose.

Igarashi,2006 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 1 Show Data putrescine initially exponential phase Polyamine requiring mutant (MA261) cannot synthesize putrescine was used.

Domka,2006 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data bssR KO LB w/ glucose, glass wool (biofilm cells processed only for array analysis), compared to WT

Robbins-Manke,2005 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data dam deletion M9 2h - LB 90 min

Shimizu,2005 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 2 Show Data cyclohexane:p-xylene (6:4 (v/v)) 10% (v/v) initially 1 min TK31 is a spontaneous p-xylene-tolerant mutant derived from JA300, LBGMg media 5 Show Data cyclohexane:p-xylene (6:4 (v/v)) 10% (v/v) initially 10 min TK31 is a spontaneous p-xylene-tolerant mutant derived from JA300, LBGMg media 4 Show Data cyclohexane:p-xylene (6:4 (v/v)) 10% (v/v) initially 5 min TK31 is a spontaneous p-xylene-tolerant mutant derived from JA300, LBGMg media

Mukhopadhyay,2004 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 2 Show Data nitrosylated glutathione (GSNO) 1mM exponential phase 5 min LB rich 4 Show Data sodium nitrite (NaNO2) 1mM exponential phase 5 min LB rich

Kabir,2004 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 3 Show Data - NH4Cl (Ammonium Chloride) vs +NH4Cl (Ammonium Chloride) +NH4Cl (Ammonium Chloride) steady 10 hr rpoS mutant (rpoS(33am)) was starved for nitrogen for 10h in M9 minimal media lacking NH4Cl and compared to mutant cells exposed to NH4Cl.

Salmon,2003 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data aerobic vs anaerobic anaerobic steady MC41OO(WT)

Gutierrez-Ríos,2003 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 2 Show Data mid log vs stationary stationary steady OD600=1.5 cells were grown to stationary phase in MOPS+ 0.2% glucose. 3 Show Data aerobic vs anaerobic (sealed flask) anaerobic (sealed flask) steady mid log cells were grown in a sealed, evacuated flask to mid-log phase.