Category: Main/EcoGene Dynamic File Resources
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 SpanUp Utility 
Description: Upload a two or three column file, which contains U00096.1 version genomic positions (two column) or addresses (three column) in bp. The last column is for the text id or descriptor. The program will automatically update and correct these address according to a change (correction) table based on U00096.2. ".p" and .xtr" are extension conventions for EcoMap format files with single bp address positions. ".spn" is the EcoMap extension for three solumn SpanFiles, in which the first two columns denote the inclusive basepair(bp) interval address. Any text files that follow this simple format will be updated to the new Genbank U00096.2 coordinates. Please report any bugs. Thank you. EcoGene Management. krudd@miami.edu
Version: 1 Filesize: 0 bytes
Added on: 11-Nov-2005 Downloads: 3493 Rating: 9 (22 Votes)
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E. coli K-12 InterGene Table
Description: Overlaps have negative length values. See Editorial.
Download an E. coli K-12 InterGene Table from the current EcoGene database. You have two choices for output file format. One is the tab delimited text file, the other is an HTML format file. You can also specify the fields you want to download and each field will be separated by a tab.
Version: EcoGene20 Filesize: 0 bytes
Added on: 11-Nov-2005 Downloads: 4992
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E. coli K-12 MG1655 Sequence Download 
Description: Download any E. coli K-12 genomic DNA sub-sequence. Instead of downloading the complete sequence, users can specify a sub-sequence to be downloaded by specifying the start and the end positions (genomic addess) on the complete sequence. Users can also request the reverse complement of the sub-sequence.
The current MG1655 genome sequence in Genbank (U00096.2) is the default, but the previous version (U00096.1) is also made available for comparison purposes.
Version: Filesize: 0 bytes
Added on: 06-Sep-2005 Downloads: 5750
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EcoGene Database Table Download
Description: Download a customized table from the current EcoGene database. The table will be a tab delimited ascii text file. You can specify the fields you want to download and each field will be separated by a tab. Please be aware that the database contents are being altered daily and that the contents of this download can change at anytime.
Version: EcoGene20 Filesize: 0 bytes
Added on: 21-Jul-2005 Downloads: 4182
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Dynamic EcoMap PDF Generation using PrintMap
Description: Dynamic (EcoMap19 + daily updates) PDF PrintMaps of the E. coli chromosome: not yet activated. See Editorial
Version: Filesize: 0 bytes
Added on: 01-Sep-2004 Downloads: 3964
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