Reference list for ygjD (EG11171) 28 total  Review Only

• 2013


• Perrochia L, Crozat E, Hecker A, Zhang W, Bareille J, Collinet B, van Tilbeurgh H, Forterre P, Basta T (2013) In vitro biosynthesis of a universal t6A tRNA modification in Archaea and Eukarya. Nucleic Acids Res 41:1953-64



• Miyauchi K, Kimura S, Suzuki T (2013) A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification. Nat Chem Biol 9:105-11



• Oberto J (2013) SyntTax: a web server linking synteny to prokaryotic taxonomy. BMC Bioinformatics 14:4



• Zhou J, Rudd KE (2013) EcoGene 3.0. Nucleic Acids Res 41:D613-24



• 2012


• El Yacoubi B, Bailly M, de Crécy-Lagard V (2012) Biosynthesis and Function of Posttranscriptional Modifications of Transfer RNAs. Annu Rev Genet 46:69-95



• Deutsch C, El Yacoubi B, de Crécy-Lagard V, Iwata-Reuyl D (2012) Biosynthesis of threonylcarbamoyl adenosine (t6A), a universal tRNA nucleoside. J Biol Chem 287:13666-73



• Bai H, You Y, Yan H, Meng J, Xue X, Hou Z, Zhou Y, Ma X, Sang G, Luo X (2012) Antisense inhibition of gene expression and growth in gram-negative bacteria by cell-penetrating peptide conjugates of peptide nucleic acids targeted to rpoD gene. Biomaterials 33:659-67



• 2011


• Hashimoto C, Sakaguchi K, Taniguchi Y, Honda H, Oshima T, Ogasawara N, Kato J (2011) Effects on transcription of mutations in ygjD, yeaZ, and yjeE genes, which are involved in a universal tRNA modification in Escherichia coli. J Bacteriol 193:6075-9



• El Yacoubi B, Hatin I, Deutsch C, Kahveci T, Rousset JP, Iwata-Reuyl D, Murzin AG, de Crécy-Lagard V (2011) A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification. EMBO J 30:882-93



• Srinivasan M, Mehta P, Yu Y, Prugar E, Koonin EV, Karzai AW, Sternglanz R (2011) The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A. EMBO J 30:873-81



• Aydin I, Saijo-Hamano Y, Namba K, Thomas C, Roujeinikova A (2011) Structural analysis of the essential resuscitation promoting factor YeaZ suggests a mechanism of nucleotide regulation through dimer reorganization. PLoS One 6:e23245



• Bergmiller T, Pena-Miller R, Boehm A, Ackermann M (2011) Single-cell time-lapse analysis of depletion of the universally conserved essential protein YgjD. BMC Microbiol 11:118



• Cohen-Or I, Katz C, Ron EZ (2011) AGEs secreted by bacteria are involved in the inflammatory response. PLoS One 6:e17974



• 2010


• Katz C, Cohen-Or I, Gophna U, Ron EZ (2010) The ubiquitous conserved glycopeptidase Gcp prevents accumulation of toxic glycated proteins. MBio 1:



• Rajagopala SV, Yamamoto N, Zweifel AE, Nakamichi T, Huang HK, Mendez-Rios JD, Franca-Koh J, Boorgula MP, Fujita K, Suzuki K, Hu JC, Wanner BL, Mori H, Uetz P (2010) The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology. BMC Genomics 11:470



• 2009


• Oberto J, Breuil N, Hecker A, Farina F, Brochier-Armanet C, Culetto E, Forterre P (2009) Qri7/OSGEPL, the mitochondrial version of the universal Kae1/YgjD protein, is essential for mitochondrial genome maintenance. Nucleic Acids Res 37:5343-52



• Msadek T (2009) Grasping at shadows: revealing the elusive nature of essential genes. J Bacteriol 191:4701-4 Comment



• Handford JI, Ize B, Buchanan G, Butland GP, Greenblatt J, Emili A, Palmer T (2009) Conserved network of proteins essential for bacterial viability. J Bacteriol 191:4732-49



• 2007


• Watt RM, Wang J, Leong M, Kung HF, Cheah KS, Liu D, Danchin A, Huang JD (2007) Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes. Nucleic Acids Res 35:e37



• 2006


• Junker LM, Peters JE, Hay AG (2006) Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Microbiology 152:2233-45



• Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2:2006.0008



• Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL (2006) Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res 34:1-9



• Rawlings ND, Morton FR, Barrett AJ (2006) MEROPS: the peptidase database. Nucleic Acids Res 34:D270-2



• 2005


• Mironova R, Niwa T, Handzhiyski Y, Sredovska A, Ivanov I (2005) Evidence for non-enzymatic glycosylation of Escherichia coli chromosomal DNA. Mol Microbiol 55:1801-11



• 2001


• Mironova R, Niwa T, Hayashi H, Dimitrova R, Ivanov I (2001) Evidence for non-enzymatic glycosylation in Escherichia coli. Mol Microbiol 39:1061-8



• 1998


• Arigoni F, Talabot F, Peitsch M, Edgerton MD, Meldrum E, Allet E, Fish R, Jamotte T, Curchod ML, Loferer H (1998) A genome-based approach for the identification of essential bacterial genes. Nat Biotechnol 16:851-6



• 1997


• Blattner FR, Plunkett G, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y (1997) The complete genome sequence of Escherichia coli K-12. Science 277:1453-62



• 1987


• Nesin M, Lupski JR, Svec P, Godson GN (1987) Possible new genes as revealed by molecular analysis of a 5-kb Escherichia coli chromosomal region 5' to the rpsU-dnaG-rpoD macromolecular-synthesis operon. Gene 51:149-61