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Bibliography (81 total) : Review Only   Up

• 2013


• Xu H, Murdaugh AE, Chen W, Aidala KE, Ferguson MA, Spain EM, Núñez ME (2013) Characterizing pilus-mediated adhesion of biofilm-forming E. coli to chemically diverse surfaces using atomic force microscopy. Langmuir 29:3000-11



• Niu C, Robbins CM, Pittman KJ, Osborn jL, Stubblefield BA, Simmons RB, Gilbert ES (2013) LuxS influences Escherichia coli biofilm formation through autoinducer-2-dependent and autoinducer-2-independent modalities. FEMS Microbiol Ecol 83:778-91



• Ren TT, Li XY, Yu HQ (2013) Effect of N-acy-l-homoserine lactones-like molecules from aerobic granules on biofilm formation by Escherichia coli K12. Bioresour Technol 129:655-8



• Kim BI, Boehm RD (2013) Imaging stability in force-feedback high-speed atomic force microscopy. Ultramicroscopy 125:29-34



• Ho CL, Chong KS, Oppong JA, Chuah ML, Tan SM, Liang ZX (2013) Visualizing the perturbation of cellular cyclic di-GMP levels in bacterial cells. J Am Chem Soc 135:566-9



• Serra DO, Richter AM, Klauck G, Mika F, Hengge R (2013) Microanatomy at cellular resolution and spatial order of physiological differentiation in a bacterial biofilm. MBio 4:e00103-13



• Vasil'eva SV, Strel'tsova DA (2013) Reconstruction of Fe-S protein clusters in Escherichia coli and biofilm formation. Dokl Biochem Biophys 448:27-32



• Mika F, Hengge R (2013) Small Regulatory RNAs in the Control of Motility and Biofilm Formation in E. coli and Salmonella. Int J Mol Sci 14:4560-79



• Tyerman JG, Ponciano JM, Joyce P, Forney LJ, Harmon LJ (2013) The evolution of antibiotic susceptibility and resistance during the formation of Escherichia coli biofilms in the absence of antibiotics. BMC Evol Biol 13:22



• Bernier SP, Lebeaux D, Defrancesco AS, Valomon A, Soubigou G, Coppée JY, Ghigo JM, Beloin C (2013) Starvation, together with the SOS response, mediates high biofilm-specific tolerance to the fluoroquinolone ofloxacin. PLoS Genet 9:e1003144



• 2012


• Sakamoto A, Terui Y, Yamamoto T, Kasahara T, Nakamura M, Tomitori H, Yamamoto K, Ishihama A, Michael AJ, Igarashi K, Kashiwagi K (2012) Enhanced biofilm formation and/or cell viability by polyamines through stimulation of response regulators UvrY and CpxR in the two-component signal transducing systems, and ribosome recycling factor. Int J Biochem Cell Biol 44:1877-86



• Yaguchi T, Dwidar M, Byun CK, Leung B, Lee S, Cho YK, Mitchell RJ, Takayama S (2012) Aqueous two-phase system-derived biofilms for bacterial interaction studies. Biomacromolecules 13:2655-61



• Chao Y, Zhang T (2012) Surface-enhanced Raman scattering (SERS) revealing chemical variation during biofilm formation: from initial attachment to mature biofilm. Anal Bioanal Chem 404:1465-75



• Teodósio JS, Simões M, Mergulhão FJ (2012) The influence of nonconjugative Escherichia coli plasmids on biofilm formation and resistance. J Appl Microbiol 113:373-82



• Terada A, Okuyama K, Nishikawa M, Tsuneda S, Hosomi M (2012) The effect of surface charge property on Escherichia coli initial adhesion and subsequent biofilm formation. Biotechnol Bioeng 109:1745-54



• Kirby AE, Garner K, Levin BR (2012) The relative contributions of physical structure and cell density to the antibiotic susceptibility of bacteria in biofilms. Antimicrob Agents Chemother 56:2967-75



• Vacheva A, Ivanova R, Paunova-Krasteva T, Stoitsova S (2012) Released products of pathogenic bacteria stimulate biofilm formation by Escherichia coli K-12 strains. Antonie Van Leeuwenhoek 102:105-19



• Martinez KA, Kitko RD, Mershon JP, Adcox HE, Malek KA, Berkmen MB, Slonczewski JL (2012) Cytoplasmic pH response to acid stress in individual cells of Escherichia coli and Bacillus subtilis observed by fluorescence ratio imaging microscopy. Appl Environ Microbiol 78:3706-14



• Shimazaki J, Furukawa S, Ogihara H, Morinaga Y (2012) L-Tryptophan prevents Escherichia coli biofilm formation and triggers biofilm degradation. Biochem Biophys Res Commun 419:715-8



• Nakao R, Ramstedt M, Wai SN, Uhlin BE (2012) Enhanced biofilm formation by Escherichia coli LPS mutants defective in Hep biosynthesis. PLoS One 7:e51241



• Grillo-Puertas M, Villegas JM, Rintoul MR, Rapisarda VA (2012) Polyphosphate degradation in stationary phase triggers biofilm formation via LuxS quorum sensing system in Escherichia coli. PLoS One 7:e50368



• Cendra Mdel M, Juárez A, Torrents E (2012) Biofilm modifies expression of ribonucleotide reductase genes in Escherichia coli. PLoS One 7:e46350



• Hong SH, Hegde M, Kim J, Wang X, Jayaraman A, Wood TK (2012) Synthetic quorum-sensing circuit to control consortial biofilm formation and dispersal in a microfluidic device. Nat Commun 3:613



• 2011


• Bunders CA, Minvielle MJ, Worthington RJ, Ortiz M, Cavanagh J, Melander C (2011) Intercepting bacterial indole signaling with flustramine derivatives. J Am Chem Soc 133:20160-3



• May T, Okabe S (2011) Enterobactin is required for biofilm development in reduced-genome Escherichia coli. Environ Microbiol 13:3149-62



• Nguyen D, Joshi-Datar A, Lépine F, Bauerle E, Olakanmi O, Beer K, McKay G, Siehnel R, Schafhauser J, Wang Y, Britigan BE, Singh PK (2011) Active starvation responses mediate antibiotic tolerance in biofilms and nutrient-limited bacteria. Science 334:982-6



• Hancock V, Witsø IL, Klemm P (2011) Biofilm formation as a function of adhesin, growth medium, substratum and strain type. Int J Med Microbiol 301:570-6



• Adnan M, Morton G, Hadi S (2011) Analysis of rpoS and bolA gene expression under various stress-induced environments in planktonic and biofilm phase using 2(-??CT) method. Mol Cell Biochem 357:275-82



• Gómez-Aguado F, Alou L, Corcuera MT, Sevillano D, Alonso MJ, Gómez-Lus ML, Prieto J (2011) Evolving architectural patterns in microbial colonies development. Microsc Res Tech 74:925-30



• Drescher K, Dunkel J, Cisneros LH, Ganguly S, Goldstein RE (2011) Fluid dynamics and noise in bacterial cell-cell and cell-surface scattering. Proc Natl Acad Sci U S A 108:10940-5



• Ogasawara H, Yamamoto K, Ishihama A (2011) Role of the biofilm master regulator CsgD in cross-regulation between biofilm formation and flagellar synthesis. J Bacteriol 193:2587-97



• Lambert G, Liao D, Vyawahare S, Austin RH (2011) Anomalous spatial redistribution of competing bacteria under starvation conditions. J Bacteriol 193:1878-83



• Rizzello L, Sorce B, Sabella S, Vecchio G, Galeone A, Brunetti V, Cingolani R, Pompa PP (2011) Impact of nanoscale topography on genomics and proteomics of adherent bacteria. ACS Nano 5:1865-76



• Ma Q, Yang Z, Pu M, Peti W, Wood TK (2011) Engineering a novel c-di-GMP-binding protein for biofilm dispersal. Environ Microbiol 13:631-42



• Mukherjee J, Ow SY, Noirel J, Biggs CA (2011) Quantitative protein expression and cell surface characteristics of Escherichia coli MG1655 biofilms. Proteomics 11:339-51



• Han TH, Lee JH, Cho MH, Wood TK, Lee J (2011) Environmental factors affecting indole production in Escherichia coli. Res Microbiol 162:108-16



• Ma Q, Zhang G, Wood TK (2011) Escherichia coli BdcA controls biofilm dispersal in Pseudomonas aeruginosa and Rhizobium meliloti. BMC Res Notes 4:447



• Shalá AA, Restrepo S, González Barrios AF (2011) A network model for biofilm development in Escherichia coli K-12. Theor Biol Med Model 8:34



• Brenner K, Arnold FH (2011) Self-organization, layered structure, and aggregation enhance persistence of a synthetic biofilm consortium. PLoS One 6:e16791



• O'Toole GA (2011) Microtiter dish biofilm formation assay. J Vis Exp :



• Teodósio JS, Simões M, Melo LF, Mergulhão FJ (2011) Flow cell hydrodynamics and their effects on E. coli biofilm formation under different nutrient conditions and turbulent flow. Biofouling 27:1-11



• 2010


• Kuczy?ska-Wi?nik D, Matuszewska E, Furmanek-Blaszk B, Leszczy?ska D, Grudowska A, Szczepaniak P, Laskowska E (2010) Antibiotics promoting oxidative stress inhibit formation of Escherichia coli biofilm via indole signalling. Res Microbiol 161:847-53



• Mukherjee J, Ow SY, Noirel J, Biggs CA (2010) Quantitative protein expression and cell surface characteristics of Escherichia coli MG1655 biofilms. Proteomics :



• Hong SH, Lee J, Wood TK (2010) Engineering global regulator Hha of Escherichia coli to control biofilm dispersal. Microb Biotechnol 3:717-28



• Reed CS, Huigens RW, Rogers SA, Melander C (2010) Modulating the development of E. coli biofilms with 2-aminoimidazoles. Bioorg Med Chem Lett 20:6310-2



• May T, Ito A, Okabe S (2010) Characterization and global gene expression of F- phenocopies during Escherichia coli biofilm formation. Mol Genet Genomics 284:333-42



• Prüss BM, Verma K, Samanta P, Sule P, Kumar S, Wu J, Christianson D, Horne SM, Stafslien SJ, Wolfe AJ, Denton A (2010) Environmental and genetic factors that contribute to Escherichia coli K-12 biofilm formation. Arch Microbiol 192:715-28



• Adnan M, Morton G, Singh J, Hadi S (2010) Contribution of rpoS and bolA genes in biofilm formation in Escherichia coli K-12 MG1655. Mol Cell Biochem 342:207-13 Review



• Stahlhut SG, Schroll C, Harmsen M, Struve C, Krogfelt KA (2010) Screening for genes involved in Klebsiella pneumoniae biofilm formation using a fosmid library. FEMS Immunol Med Microbiol 59:521-4



• López D, Vlamakis H, Kolter R (2010) Biofilms. Cold Spring Harb Perspect Biol 2:a000398 Review



• Bunders CA, Richards JJ, Melander C (2010) Identification of aryl 2-aminoimidazoles as biofilm inhibitors in Gram-negative bacteria. Bioorg Med Chem Lett 20:3797-800



• Rodrigues DF, Elimelech M (2010) Toxic effects of single-walled carbon nanotubes in the development of E. coli biofilm. Environ Sci Technol 44:4583-9



• Hong SH, Wang X, Wood TK (2010) Controlling biofilm formation, prophage excision and cell death by rewiring global regulator H-NS of Escherichia coli. Microb Biotechnol 3:344-56



• Rivardo F, Martinotti MG, Turner RJ, Ceri H (2010) The activity of silver against Escherichia coli biofilm is increased by a lipopeptide biosurfactant. Can J Microbiol 56:272-8



• 2009


• Sule P, Wadhawan T, Carr NJ, Horne SM, Wolfe AJ, Prüss BM (2009) A combination of assays reveals biomass differences in biofilms formed by Escherichia coli mutants. Lett Appl Microbiol 49:299-304



• Boehm A, Steiner S, Zaehringer F, Casanova A, Hamburger F, Ritz D, Keck W, Ackermann M, Schirmer T, Jenal U (2009) Second messenger signalling governs Escherichia coli biofilm induction upon ribosomal stress. Mol Microbiol 72:1500-16



• Ito A, Taniuchi A, May T, Kawata K, Okabe S (2009) Increased antibiotic resistance of Escherichia coli in mature biofilms. Appl Environ Microbiol 75:4093-100



• Bigelow TA, Northagen T, Hill TM, Sailer FC (2009) The destruction of Escherichia coli biofilms using high-intensity focused ultrasound. Ultrasound Med Biol 35:1026-31



• Vejborg RM, Klemm P (2009) Cellular chain formation in Escherichia coli biofilms. Microbiology 155:1407-17



• Landini P (2009) Cross-talk mechanisms in biofilm formation and responses to environmental and physiological stress in Escherichia coli. Res Microbiol 160:259-66



• Eun YJ, Weibel DB (2009) Fabrication of microbial biofilm arrays by geometric control of cell adhesion. Langmuir 25:4643-54



• Kraigsley AM, Finkel SE (2009) Adaptive evolution in single species bacterial biofilms. FEMS Microbiol Lett 293:135-40



• Hong Y, Brown DG (2009) Variation in bacterial ATP level and proton motive force due to adhesion to a solid surface. Appl Environ Microbiol 75:2346-53



• Lee J, Maeda T, Hong SH, Wood TK (2009) Reconfiguring the quorum-sensing regulator SdiA of Escherichia coli to control biofilm formation via indole and N-acylhomoserine lactones. Appl Environ Microbiol 75:1703-16



• Perrin C, Briandet R, Jubelin G, Lejeune P, Mandrand-Berthelot MA, Rodrigue A, Dorel C (2009) Nickel promotes biofilm formation by Escherichia coli K-12 strains that produce curli. Appl Environ Microbiol 75:1723-33



• Davies DG, Marques CN (2009) A fatty acid messenger is responsible for inducing dispersion in microbial biofilms. J Bacteriol 191:1393-403



• Monds RD, O'Toole GA (2009) The developmental model of microbial biofilms: ten years of a paradigm up for review. Trends Microbiol 17:73-87 Review



• Wood TK (2009) Insights on Escherichia coli biofilm formation and inhibition from whole-transcriptome profiling. Environ Microbiol 11:1-15 Review



• 2008


• Beloin C, Houry A, Froment M, Ghigo JM, Henry N (2008) A short-time scale colloidal system reveals early bacterial adhesion dynamics. PLoS Biol 6:e167



• Lichter JA, Thompson MT, Delgadillo M, Nishikawa T, Rubner MF, Van Vliet KJ (2008) Substrata mechanical stiffness can regulate adhesion of viable bacteria. Biomacromolecules 9:1571-8



• Vejborg RM, Klemm P (2008) Blocking of bacterial biofilm formation by a fish protein coating. Appl Environ Microbiol 74:3551-8



• Yang X, Ma Q, Wood TK (2008) The R1 conjugative plasmid increases Escherichia coli biofilm formation through an envelope stress response. Appl Environ Microbiol 74:2690-9



• Prado F, Kerr B (2008) The evolution of restraint in bacterial biofilms under nontransitive competition. Evolution 62:538-48



• Han Y, Hou S, Simon KA, Ren D, Luk YY (2008) Identifying the important structural elements of brominated furanones for inhibiting biofilm formation by Escherichia coli. Bioorg Med Chem Lett 18:1006-10



• García-Contreras R, Zhang XS, Kim Y, Wood TK (2008) Protein translation and cell death: the role of rare tRNAs in biofilm formation and in activating dormant phage killer genes. PLoS One 3:e2394



• Beloin C, Roux A, Ghigo JM (2008) Escherichia coli biofilms. Curr Top Microbiol Immunol 322:249-89 Review



• Lewis K (2008) Multidrug tolerance of biofilms and persister cells. Curr Top Microbiol Immunol 322:107-31 Review



• 2006


• Camilli A, Bassler BL (2006) Bacterial small-molecule signaling pathways. Science 311:1113-6 Review



• 2003


• Reisner A, Haagensen JA, Schembri MA, Zechner EL, Molin S (2003) Development and maturation of Escherichia coli K-12 biofilms. Mol Microbiol 48:933-46



• 2001


• Kirchman DL (2001) Bacteria in biofilms are living an unnatural life. Nature 413:772 Comment



• Ghigo JM (2001) Natural conjugative plasmids induce bacterial biofilm development. Nature 412:442-5