Description:

Details:

Bibliography (57 total) : Review Only   Up

• 2013


• Corzett CH, Goodman MF, Finkel SE (2013) Competitive Fitness During Feast and Famine: How SOS DNA Polymerases Influence Physiology and Evolution in Escherichia coli. Genetics 194:409-20



• Gupta MK, Guy CP, Yeeles JT, Atkinson J, Bell H, Lloyd RG, Marians KJ, McGlynn P (2013) Protein-DNA complexes are the primary sources of replication fork pausing in Escherichia coli. Proc Natl Acad Sci U S A 110:7252-7



• Kurth I, Georgescu RE, O'Donnell ME (2013) A solution to release twisted DNA during chromosome replication by coupled DNA polymerases. Nature 496:119-22



• Indiani C, Patel M, Goodman MF, O'Donnell ME (2013) RecA acts as a switch to regulate polymerase occupancy in a moving replication fork. Proc Natl Acad Sci U S A 110:5410-5



• Skarstad K, Katayama T (2013) Regulating DNA replication in bacteria. Cold Spring Harb Perspect Biol 5:a012922



• Lia G, Rigato A, Long E, Chagneau C, Le Masson M, Allemand JF, Michel B (2013) RecA-promoted, RecFOR-independent progressive disassembly of replisomes stalled by helicase inactivation. Mol Cell 49:547-57



• 2012


• Fijalkowska IJ, Schaaper RM, Jonczyk P (2012) DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair. FEMS Microbiol Rev 36:1105-21 Review



• Pagès V, Mazon G, Naiman K, Philippin G, Fuchs RP (2012) Monitoring bypass of single replication-blocking lesions by damage avoidance in the Escherichia coli chromosome. Nucleic Acids Res 40:9036-43



• Lia G, Michel B, Allemand JF (2012) Polymerase exchange during Okazaki fragment synthesis observed in living cells. Science 335:328-31



• De Septenville AL, Duigou S, Boubakri H, Michel B (2012) Replication fork reversal after replication-transcription collision. PLoS Genet 8:e1002622



• Hill NS, Kadoya R, Chattoraj DK, Levin PA (2012) Cell size and the initiation of DNA replication in bacteria. PLoS Genet 8:e1002549



• 2011


• Yeeles JT, Marians KJ (2011) The Escherichia coli replisome is inherently DNA damage tolerant. Science 334:235-8



• Gan W, Guan Z, Liu J, Gui T, Shen K, Manley JL, Li X (2011) R-loop-mediated genomic instability is caused by impairment of replication fork progression. Genes Dev 25:2041-56



• Kaguni JM (2011) Replication initiation at the Escherichia coli chromosomal origin. Curr Opin Chem Biol 15:606-13



• Dutta D, Shatalin K, Epshtein V, Gottesman ME, Nudler E (2011) Linking RNA polymerase backtracking to genome instability in E. coli. Cell 146:533-43



• Wang X, Lesterlin C, Reyes-Lamothe R, Ball G, Sherratt DJ (2011) Replication and segregation of an Escherichia coli chromosome with two replication origins. Proc Natl Acad Sci U S A 108:E243-50



• Tanner NA, Tolun G, Loparo JJ, Jergic S, Griffith JD, Dixon NE, van Oijen AM (2011) E. coli DNA replication in the absence of free ? clamps. EMBO J 30:1830-40



• Norris V (2011) Speculations on the initiation of chromosome replication in Escherichia coli: the dualism hypothesis. Med Hypotheses 76:706-16



• Stahl F, Meselson M (2011) Letter to the editor. DNA Repair (Amst) 10:118 Comment



• Le HT, Gautier V, Kthiri F, Kohiyama M, Katayama T, Richarme G (2011) DNA replication defects in a mutant deficient in the thioredoxin homolog YbbN. Biochem Biophys Res Commun 405:52-7



• Martín CM, Guzmán EC (2011) DNA replication initiation as a key element in thymineless death. DNA Repair (Amst) 10:94-101



• 2010


• Pomerantz RT, O'Donnell M (2010) Polymerase trafficking: A role for transcription factors in preventing replication fork arrest. Transcription 1:136-139



• Ton-Hoang B, Pasternak C, Siguier P, Guynet C, Hickman AB, Dyda F, Sommer S, Chandler M (2010) Single-stranded DNA transposition is coupled to host replication. Cell 142:398-408



• Pomerantz RT, O'Donnell M (2010) What happens when replication and transcription complexes collide? Cell Cycle 9:2537-43 Review



• Georgescu RE, Yao NY, O'Donnell M (2010) Single-molecule analysis of the Escherichia coli replisome and use of clamps to bypass replication barriers. FEBS Lett 584:2596-605 Review



• Yao NY, O'Donnell M (2010) SnapShot: The replisome. Cell 141:1088, 1088.e1



• Liu X, Wang X, Reyes-Lamothe R, Sherratt D (2010) Replication-directed sister chromosome alignment in Escherichia coli. Mol Microbiol 75:1090-7



• Katayama T, Ozaki S, Keyamura K, Fujimitsu K (2010) Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC. Nat Rev Microbiol 8:163-70



• Boubakri H, de Septenville AL, Viguera E, Michel B (2010) The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo. EMBO J 29:145-57



• Jeiranian HA, Schalow BJ, Courcelle J (2010) Visualization of UV-induced replication intermediates in E. coli using two-dimensional agarose-gel analysis. J Vis Exp :



• Pomerantz RT, O'Donnell M (2010) Direct restart of a replication fork stalled by a head-on RNA polymerase. J Vis Exp :



• 2009


• Christian TD, Romano LJ, Rueda D (2009) Single-molecule measurements of synthesis by DNA polymerase with base-pair resolution. Proc Natl Acad Sci U S A 106:21109-14



• Langston LD, Indiani C, O'Donnell M (2009) Whither the replisome: emerging perspectives on the dynamic nature of the DNA replication machinery. Cell Cycle 8:2686-91 Review



• Yao NY, Georgescu RE, Finkelstein J, O'Donnell ME (2009) Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression. Proc Natl Acad Sci U S A 106:13236-41



• Flåtten I, Morigen , Skarstad K (2009) DnaA protein interacts with RNA polymerase and partially protects it from the effect of rifampicin. Mol Microbiol 71:1018-30



• Odsbu I, Morigen , Skarstad K (2009) A reduction in ribonucleotide reductase activity slows down the chromosome replication fork but does not change its localization. PLoS One 4:e7617



• Tanner NA, van Oijen AM (2009) Single-molecule observation of prokaryotic DNA replication. Methods Mol Biol 521:397-410



• Dalgaard JZ, Eydmann T, Koulintchenko M, Sayrac S, Vengrova S, Yamada-Inagawa T (2009) Random and site-specific replication termination. Methods Mol Biol 521:35-53 Review



• 2008


• Pomerantz RT, O'Donnell M (2008) The replisome uses mRNA as a primer after colliding with RNA polymerase. Nature 456:762-6



• Duggin IG, Wake RG, Bell SD, Hill TM (2008) The replication fork trap and termination of chromosome replication. Mol Microbiol 70:1323-33 Review



• Yao NY, O'Donnell M (2008) Replisome dynamics and use of DNA trombone loops to bypass replication blocks. Mol Biosyst 4:1075-84 Review



• Atlas JC, Nikolaev EV, Browning ST, Shuler ML (2008) Incorporating genome-wide DNA sequence information into a dynamic whole-cell model of Escherichia coli: application to DNA replication. IET Syst Biol 2:369-82



• Tanner NA, Hamdan SM, Jergic S, Loscha KV, Schaeffer PM, Dixon NE, van Oijen AM (2008) Single-molecule studies of fork dynamics in Escherichia coli DNA replication. Nat Struct Mol Biol 15:998



• Bates D (2008) The bacterial replisome: back on track? Mol Microbiol 69:1341-8 Review



• McGlynn P, Guy CP (2008) Replication forks blocked by protein-DNA complexes have limited stability in vitro. J Mol Biol 381:249-55



• Tang KH, Tsai MD (2008) Structure and function of 2:1 DNA polymerase.DNA complexes. J Cell Physiol 216:315-20 Review



• Espeli O, Mercier R, Boccard F (2008) DNA dynamics vary according to macrodomain topography in the E. coli chromosome. Mol Microbiol 68:1418-27



• Reyes-Lamothe R, Possoz C, Danilova O, Sherratt DJ (2008) Independent positioning and action of Escherichia coli replisomes in live cells. Cell 133:90-102



• Haeusser DP, Levin PA (2008) The great divide: coordinating cell cycle events during bacterial growth and division. Curr Opin Microbiol 11:94-9 Review



• Kouzminova EA, Kuzminov A (2008) Patterns of chromosomal fragmentation due to uracil-DNA incorporation reveal a novel mechanism of replication-dependent double-stranded breaks. Mol Microbiol 68:202-15



• Nielsen O, Løbner-Olesen A (2008) Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells. EMBO Rep 9:151-6 Review



• Tanner NA, Hamdan SM, Jergic S, Loscha KV, Schaeffer PM, Dixon NE, van Oijen AM (2008) Single-molecule studies of fork dynamics in Escherichia coli DNA replication. Nat Struct Mol Biol 15:170-6



• 2007


• Lovett ST (2007) Polymerase switching in DNA replication. Mol Cell 27:523-6 Review



• Cui T, Moro-oka N, Ohsumi K, Kodama K, Ohshima T, Ogasawara N, Mori H, Wanner B, Niki H, Horiuchi T (2007) Escherichia coli with a linear genome. EMBO Rep 8:181-7



• 2006


• Mirkin EV, Castro Roa D, Nudler E, Mirkin SM (2006) Transcription regulatory elements are punctuation marks for DNA replication. Proc Natl Acad Sci U S A 103:7276-81



• Kaguni JM (2006) DnaA: controlling the initiation of bacterial DNA replication and more. Annu Rev Microbiol 60:351-75 Review



• 1997


• Wagner J, Kamiya H, Fuchs RP (1997) Leading versus lagging strand mutagenesis induced by 7,8-dihydro-8-oxo-2'-deoxyguanosine in Escherichia coli. J Mol Biol 265:302-9