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Bibliography (18 total) : Review Only   Up

• 2013


• Zhi X, Leng F (2013) Dependence of transcription-coupled DNA supercoiling on promoter strength in Escherichia coli topoisomerase I deficient strains. Gene 514:82-90



• 2012


• Nedialkov YA, Nudler E, Burton ZF (2012) RNA polymerase stalls in a post-translocated register and can hyper-translocate. Transcription 3:



• Iyer LM, Aravind L (2012) Insights from the architecture of the bacterial transcription apparatus. J Struct Biol 179:299-319



• Billingsley DJ, Bonass WA, Crampton N, Kirkham J, Thomson NH (2012) Single-molecule studies of DNA transcription using atomic force microscopy. Phys Biol 9:021001 Review



• Sánchez-Romero MA, Lee DJ, Sánchez-Morán E, Busby SJ (2012) Location and dynamics of an active promoter in Escherichia coli K-12. Biochem J 441:481-5



• 2011


• Bratton BP, Mooney RA, Weisshaar JC (2011) Spatial distribution and diffusive motion of RNA polymerase in live Escherichia coli. J Bacteriol 193:5138-46



• So LH, Ghosh A, Zong C, Sepúlveda LA, Segev R, Golding I (2011) General properties of transcriptional time series in Escherichia coli. Nat Genet 43:554-60



• Mäkelä J, Lloyd-Price J, Yli-Harja O, Ribeiro AS (2011) Stochastic sequence-level model of coupled transcription and translation in prokaryotes. BMC Bioinformatics 12:121



• 2010


• Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, Hearn J, Emili A, Xie XS (2010) Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329:533-8



• Pomerantz RT, O'Donnell M (2010) What happens when replication and transcription complexes collide? Cell Cycle 9:2537-43 Review



• Montero Llopis P, Jackson AF, Sliusarenko O, Surovtsev I, Heinritz J, Emonet T, Jacobs-Wagner C (2010) Spatial organization of the flow of genetic information in bacteria. Nature 466:77-81



• Herbert KM, Zhou J, Mooney RA, Porta AL, Landick R, Block SM (2010) E. coli NusG inhibits backtracking and accelerates pause-free transcription by promoting forward translocation of RNA polymerase. J Mol Biol 399:17-30



• 2009


• Zaslaver A, Kaplan S, Bren A, Jinich A, Mayo A, Dekel E, Alon U, Itzkovitz S (2009) Invariant distribution of promoter activities in Escherichia coli. PLoS Comput Biol 5:e1000545



• 2008


• Greive SJ, Weitzel SE, Goodarzi JP, Main LJ, Pasman Z, von Hippel PH (2008) Monitoring RNA transcription in real time by using surface plasmon resonance. Proc Natl Acad Sci U S A 105:3315-20



• Golding I, Cox EC (2008) Chapter 8: Spatiotemporal dynamics in bacterial cells: real-time studies with single-event resolution. Methods Cell Biol 89:223-51



• 1997


• Nudler E, Mustaev A, Lukhtanov E, Goldfarb A (1997) The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase. Cell 89:33-41



• 1996


• Nudler E, Avetissova E, Markovtsov V, Goldfarb A (1996) Transcription processivity: protein-DNA interactions holding together the elongation complex. Science 273:211-7



• Kubori T, Shimamoto N (1996) Kinetics of transcription in a minute column. Nucleic Acids Res 24:1380-1