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- 2010
- 2009
- 2008
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Hansen S, Lewis K, Vulić M (2008) Role of global regulators and nucleotide metabolism in antibiotic tolerance in Escherichia coli. Antimicrob Agents Chemother 52:2718-26
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Stymest KH, Klappa P (2008) The periplasmic peptidyl prolyl cis-trans isomerases PpiD and SurA have partially overlapping substrate specificities. FEBS J 275:3470-9
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Vuong P, Bennion D, Mantei J, Frost D, Misra R (2008) Analysis of YfgL and YaeT interactions through bioinformatics, mutagenesis, and biochemistry. J Bacteriol 190:1507-17
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Alcock FH, Grossmann JG, Gentle IE, Likić VA, Lithgow T, Tokatlidis K (2008) Conserved substrate binding by chaperones in the bacterial periplasm and the mitochondrial intermembrane space. Biochem J 409:377-87
- 2007
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Niba ET, Naka Y, Nagase M, Mori H, Kitakawa M (2007) A genome-wide approach to identify the genes involved in biofilm formation in E. coli. DNA Res 14:237-46
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Xu X, Wang S, Hu YX, McKay DB (2007) The periplasmic bacterial molecular chaperone SurA adapts its structure to bind peptides in different conformations to assert a sequence preference for aromatic residues. J Mol Biol 373:367-81
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Sklar JG, Wu T, Kahne D, Silhavy TJ (2007) Defining the roles of the periplasmic chaperones SurA, Skp, and DegP in Escherichia coli. Genes Dev 21:2473-84
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Smith LK, Gomez MJ, Shatalin KY, Lee H, Neyfakh AA (2007) Monitoring of gene knockouts: genome-wide profiling of conditionally essential genes. Genome Biol 8:R87
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Lu P, Vogel C, Wang R, Yao X, Marcotte EM (2007) Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat Biotechnol 25:117-24
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Ureta AR, Endres RG, Wingreen NS, Silhavy TJ (2007) Kinetic analysis of the assembly of the outer membrane protein LamB in Escherichia coli mutants each lacking a secretion or targeting factor in a different cellular compartment. J Bacteriol 189:446-54
- 2006
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Merz F, Hoffmann A, Rutkowska A, Zachmann-Brand B, Bukau B, Deuerling E (2006) The C-terminal domain of Escherichia coli trigger factor represents the central module of its chaperone activity. J Biol Chem 281:31963-71
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Charlson ES, Werner JN, Misra R (2006) Differential effects of yfgL mutation on Escherichia coli outer membrane proteins and lipopolysaccharide. J Bacteriol 188:7186-94
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Justice SS, Lauer SR, Hultgren SJ, Hunstad DA (2006) Maturation of intracellular Escherichia coli communities requires SurA. Infect Immun 74:4793-800
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Schlapschy M, Grimm S, Skerra A (2006) A system for concomitant overexpression of four periplasmic folding catalysts to improve secretory protein production in Escherichia coli. Protein Eng Des Sel 19:385-90
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Han MJ, Lee SY (2006) The Escherichia coli proteome: past, present, and future prospects. Microbiol Mol Biol Rev 70:362-439 Review
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Castanié-Cornet MP, Cam K, Jacq A (2006) RcsF is an outer membrane lipoprotein involved in the RcsCDB phosphorelay signaling pathway in Escherichia coli. J Bacteriol 188:4264-70
- 2005
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Justice SS, Hunstad DA, Harper JR, Duguay AR, Pinkner JS, Bann J, Frieden C, Silhavy TJ, Hultgren SJ (2005) Periplasmic peptidyl prolyl cis-trans isomerases are not essential for viability, but SurA is required for pilus biogenesis in Escherichia coli. J Bacteriol 187:7680-6
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Schleiff E, Soll J (2005) Membrane protein insertion: mixing eukaryotic and prokaryotic concepts. EMBO Rep 6:1023-7 Review
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Mogensen JE, Kleinschmidt JH, Schmidt MA, Otzen DE (2005) Misfolding of a bacterial autotransporter. Protein Sci 14:2814-27
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Werner J, Misra R (2005) YaeT (Omp85) affects the assembly of lipid-dependent and lipid-independent outer membrane proteins of Escherichia coli. Mol Microbiol 57:1450-9
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Onufryk C, Crouch ML, Fang FC, Gross CA (2005) Characterization of six lipoproteins in the sigmaE regulon. J Bacteriol 187:4552-61
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Hennecke G, Nolte J, Volkmer-Engert R, Schneider-Mergener J, Behrens S (2005) The periplasmic chaperone SurA exploits two features characteristic of integral outer membrane proteins for selective substrate recognition. J Biol Chem 280:23540-8
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Ihling C, Sinz A (2005) Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Proteomics 5:2029-42
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Cuny C, Dukan L, Fraysse L, Ballesteros M, Dukan S (2005) Investigation of the first events leading to loss of culturability during Escherichia coli starvation: future nonculturable bacteria form a subpopulation. J Bacteriol 187:2244-8
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Maurer LM, Yohannes E, Bondurant SS, Radmacher M, Slonczewski JL (2005) pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. J Bacteriol 187:304-19
- 2004
- 2003
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Bitto E, McKay DB (2003) The periplasmic molecular chaperone protein SurA binds a peptide motif that is characteristic of integral outer membrane proteins. J Biol Chem 278:49316-22
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Werner J, Augustus AM, Misra R (2003) Assembly of TolC, a structurally unique and multifunctional outer membrane protein of Escherichia coli K-12. J Bacteriol 185:6540-7
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Qin ZS, McCue LA, Thompson W, Mayerhofer L, Lawrence CE, Liu JS (2003) Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Nat Biotechnol 21:435-9
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Struve C, Forestier C, Krogfelt KA (2003) Application of a novel multi-screening signature-tagged mutagenesis assay for identification of Klebsiella pneumoniae genes essential in colonization and infection. Microbiology 149:167-76
- 2002
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Bitto E, McKay DB (2002) Crystallographic structure of SurA, a molecular chaperone that facilitates folding of outer membrane porins. Structure 10:1489-98
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Behrens S (2002) Periplasmic chaperones--new structural and functional insights. Structure 10:1469-71
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McCue LA, Thompson W, Carmack CS, Lawrence CE (2002) Factors influencing the identification of transcription factor binding sites by cross-species comparison. Genome Res 12:1523-32
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Vulić M, Kolter R (2002) Alcohol-induced delay of viability loss in stationary-phase cultures of Escherichia coli. J Bacteriol 184:2898-905
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Pease AJ, Roa BR, Luo W, Winkler ME (2002) Positive growth rate-dependent regulation of the pdxA, ksgA, and pdxB genes of Escherichia coli K-12. J Bacteriol 184:1359-69
- 2001
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Webb HM, Ruddock LW, Marchant RJ, Jonas K, Klappa P (2001) Interaction of the periplasmic peptidylprolyl cis-trans isomerase SurA with model peptides. The N-terminal region of SurA id essential and sufficient for peptide binding. J Biol Chem 276:45622-7
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Rizzitello AE, Harper JR, Silhavy TJ (2001) Genetic evidence for parallel pathways of chaperone activity in the periplasm of Escherichia coli. J Bacteriol 183:6794-800
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Dartigalongue C, Missiakas D, Raina S (2001) Characterization of the Escherichia coli sigma E regulon. J Biol Chem 276:20866-75
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Behrens S, Maier R, de Cock H, Schmid FX, Gross CA (2001) The SurA periplasmic PPIase lacking its parvulin domains functions in vivo and has chaperone activity. EMBO J 20:285-94
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Müller M, Koch HG, Beck K, Schäfer U (2001) Protein traffic in bacteria: multiple routes from the ribosome to and across the membrane. Prog Nucleic Acid Res Mol Biol 66:107-57 Review
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- 1998
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Lazar SW, Almirón M, Tormo A, Kolter R (1998) Role of the Escherichia coli SurA protein in stationary-phase survival. J Bacteriol 180:5704-11
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Dartigalongue C, Raina S (1998) A new heat-shock gene, ppiD, encodes a peptidyl-prolyl isomerase required for folding of outer membrane proteins in Escherichia coli. EMBO J 17:3968-80
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Wilkins MR, Gasteiger E, Tonella L, Ou K, Tyler M, Sanchez JC, Gooley AA, Walsh BJ, Bairoch A, Appel RD, Williams KL, Hochstrasser DF (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
- 1997
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Cook GM, Membrillo-Hernández J, Poole RK (1997) Transcriptional regulation of the cydDC operon, encoding a heterodimeric ABC transporter required for assembly of cytochromes c and bd in Escherichia coli K-12: regulation by oxygen and alternative electron acceptors. J Bacteriol 179:6525-30
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Blattner FR, Plunkett G, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y (1997) The complete genome sequence of Escherichia coli K-12. Science 277:1453-62
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Link AJ, Robison K, Church GM (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-313 Review
- 1996
- 1995
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Rouvière PE, De Las Peñas A, Mecsas J, Lu CZ, Rudd KE, Gross CA (1995) rpoE, the gene encoding the second heat-shock sigma factor, sigma E, in Escherichia coli. EMBO J 14:1032-42
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Rudd KE, Sofia HJ, Koonin EV, Plunkett G, Lazar S, Rouviere PE (1995) A new family of peptidyl-prolyl isomerases. Trends Biochem Sci 20:12-4
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