GenePage for the gatC' pseudogene of Escherichia coli K-12

Primary Gene Name: gatC'
EcoGene Accession Number: EG12416
K-12 Gene Accession Number: ECK2085
MG1655 Gene Identifier: b2092
Gene Name Mnemonic: Galactitol
Alternate Gene Symbols: None
Description: Pseudogene reconstruction, galactitol-specific PTS system EIIC component
  # bp Upstream # bp Downstream
MW: 48365.00 ---------451 aa Pre-Run BlastP UniProt
Pre-Run BlastP NR+Env
Left End: 2172921
Left Intergenic Region

Name: gatD_gatC

Length: 47 bp gap

Orientation: Codirectional-

Left_end: 2172874

Right_end: 2172920

Centisome: 46.81

Genomic Address join

The following join statement uses GenBank syntax to describe how the reconstructed gatC pseudogene protein sequence was translated from the DNA:

complement(join(2172921..2173362,2173365..2174278))


Counterclockwise
Minute or Centisome (%) = 46.81
Right End: 2174278
Right Intergenic Region

Name: gatC_gatB

Length: 3 bp gap

Orientation: Codirectional-

Left_end: 2174279

Right_end: 2174281

Centisome: 46.84

The gatC pseudogene in MG1655(Seq) is a lab mutation with a frameshift mutation (insertion of CC at codon 305) acquired during the genome sequencing process; the parental MG1655 strain has an intact gatC gene (Freddolino, 2012). The CC at codon 305 has been removed in the gatC pseudogene reconstruction displayed by the DNA button; the protein tab displays the reconstructed GatC protein sequence. The DNA tab shows the unreconstructed genomic DNA sequence for gatC'.

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BamHI EcoRI HindIII